miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 5' -57.1 NC_006146.1 + 130026 0.66 0.900882
Target:  5'- aGGCCCCGGCuccgucuccGGACCgcgagccgGGCc -3'
miRNA:   3'- aCCGGGGCCG---------CCUGGaguauuagUCG- -5'
28928 5' -57.1 NC_006146.1 + 123265 0.66 0.900253
Target:  5'- gGGCCgCGGCcagaGACggCUCGUGgcccuAUCGGCg -3'
miRNA:   3'- aCCGGgGCCGc---CUG--GAGUAU-----UAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 44518 0.66 0.900253
Target:  5'- aGGCCCCuGGUGgGAUC-CAUGG-CAGg -3'
miRNA:   3'- aCCGGGG-CCGC-CUGGaGUAUUaGUCg -5'
28928 5' -57.1 NC_006146.1 + 10675 0.66 0.900253
Target:  5'- aGGCCCgGggcgauacccGCGGGCaUCAUGcaggCAGCa -3'
miRNA:   3'- aCCGGGgC----------CGCCUGgAGUAUua--GUCG- -5'
28928 5' -57.1 NC_006146.1 + 28331 0.66 0.900253
Target:  5'- cUGGCCCCgcccGGUGG-CCUUGggg-UAGCu -3'
miRNA:   3'- -ACCGGGG----CCGCCuGGAGUauuaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 22175 0.66 0.900253
Target:  5'- cUGGCCCCgcccGGUGG-CCUUGggg-UAGCu -3'
miRNA:   3'- -ACCGGGG----CCGCCuGGAGUauuaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 25253 0.66 0.900253
Target:  5'- cUGGCCCCgcccGGUGG-CCUUGggg-UAGCu -3'
miRNA:   3'- -ACCGGGG----CCGCCuGGAGUauuaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 12942 0.66 0.900253
Target:  5'- cUGGCCCCgcccGGUGG-CCUUGggg-UAGCu -3'
miRNA:   3'- -ACCGGGG----CCGCCuGGAGUauuaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 16019 0.66 0.900253
Target:  5'- cUGGCCCCgcccGGUGG-CCUUGggg-UAGCu -3'
miRNA:   3'- -ACCGGGG----CCGCCuGGAGUauuaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 86018 0.66 0.900253
Target:  5'- aGGaCCUgGGUGGACCaUCGcAA-CAGCc -3'
miRNA:   3'- aCC-GGGgCCGCCUGG-AGUaUUaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 124518 0.66 0.900253
Target:  5'- cGGCCCUGGCgagggacggGGGCCUgGgggagcugcuGUCGGa -3'
miRNA:   3'- aCCGGGGCCG---------CCUGGAgUau--------UAGUCg -5'
28928 5' -57.1 NC_006146.1 + 143650 0.66 0.900253
Target:  5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3'
miRNA:   3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5'
28928 5' -57.1 NC_006146.1 + 3340 0.66 0.900253
Target:  5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3'
miRNA:   3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5'
28928 5' -57.1 NC_006146.1 + 2408 0.66 0.900253
Target:  5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3'
miRNA:   3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5'
28928 5' -57.1 NC_006146.1 + 1476 0.66 0.900253
Target:  5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3'
miRNA:   3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5'
28928 5' -57.1 NC_006146.1 + 545 0.66 0.900253
Target:  5'- cGGCCUCuccGCGGGCCUCcacacgUGGCc -3'
miRNA:   3'- aCCGGGGc--CGCCUGGAGuauua-GUCG- -5'
28928 5' -57.1 NC_006146.1 + 155961 0.66 0.900253
Target:  5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3'
miRNA:   3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5'
28928 5' -57.1 NC_006146.1 + 152883 0.66 0.900253
Target:  5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3'
miRNA:   3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5'
28928 5' -57.1 NC_006146.1 + 149805 0.66 0.900253
Target:  5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3'
miRNA:   3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5'
28928 5' -57.1 NC_006146.1 + 146727 0.66 0.900253
Target:  5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3'
miRNA:   3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.