miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28930 3' -66 NC_006146.1 + 83766 0.66 0.522441
Target:  5'- uGGguGGccuGGUGGGaGGUCGCAGuCgACCCc -3'
miRNA:   3'- -CCguCC---CCGCCC-CCGGUGUCcG-UGGG- -5'
28930 3' -66 NC_006146.1 + 58436 0.66 0.522441
Target:  5'- gGGguGGGucUGGGGGUCACAGaGUAUg- -3'
miRNA:   3'- -CCguCCCc-GCCCCCGGUGUC-CGUGgg -5'
28930 3' -66 NC_006146.1 + 48846 0.66 0.522441
Target:  5'- uGCuccucGGaGGCGGGcgcgaagccgucGGCCucCAGGCGCCa -3'
miRNA:   3'- cCGu----CC-CCGCCC------------CCGGu-GUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 33221 0.66 0.522441
Target:  5'- uGCuccGGGGCagccGGGuGGCCGCcGGCGggUCCg -3'
miRNA:   3'- cCGu--CCCCG----CCC-CCGGUGuCCGU--GGG- -5'
28930 3' -66 NC_006146.1 + 127090 0.66 0.522441
Target:  5'- gGGcCAGGGcggaGCGGuGGG--ACAGGCacGCCCa -3'
miRNA:   3'- -CC-GUCCC----CGCC-CCCggUGUCCG--UGGG- -5'
28930 3' -66 NC_006146.1 + 64176 0.66 0.522441
Target:  5'- aGGCu-GGGUGGGGGCaGCAGGagUugCa -3'
miRNA:   3'- -CCGucCCCGCCCCCGgUGUCC--GugGg -5'
28930 3' -66 NC_006146.1 + 40550 0.66 0.52153
Target:  5'- aGCAGGGucaugaaggugguGCGGGGGaCGCugaugAGGUccugGCCCu -3'
miRNA:   3'- cCGUCCC-------------CGCCCCCgGUG-----UCCG----UGGG- -5'
28930 3' -66 NC_006146.1 + 118633 0.66 0.52153
Target:  5'- cGUGGGGGCGcccGGGGCC-CAGuacacguGCGUCCa -3'
miRNA:   3'- cCGUCCCCGC---CCCCGGuGUC-------CGUGGG- -5'
28930 3' -66 NC_006146.1 + 100242 0.66 0.516985
Target:  5'- uGGCAGuGGGggcguucacgcaCGGGGGCUccauggagccuccuaGCGGGgGCUg -3'
miRNA:   3'- -CCGUC-CCC------------GCCCCCGG---------------UGUCCgUGGg -5'
28930 3' -66 NC_006146.1 + 167149 0.66 0.51336
Target:  5'- aGGUcuAGGGGacccacccCGGgcugaaGGGCCACGcGGCcCCCa -3'
miRNA:   3'- -CCG--UCCCC--------GCC------CCCGGUGU-CCGuGGG- -5'
28930 3' -66 NC_006146.1 + 53593 0.66 0.51336
Target:  5'- uGGCAGGGaugcCGGGgaaaGGgCGC-GGCACCg -3'
miRNA:   3'- -CCGUCCCc---GCCC----CCgGUGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 3357 0.66 0.51336
Target:  5'- aGGCAGcGGG-GGGagaaaaucaacGGCCGC-GGCGuCCUa -3'
miRNA:   3'- -CCGUC-CCCgCCC-----------CCGGUGuCCGU-GGG- -5'
28930 3' -66 NC_006146.1 + 113509 0.66 0.512455
Target:  5'- cGGCcGGGcacggucGCGGGGccagcCCACcGGCGCCa -3'
miRNA:   3'- -CCGuCCC-------CGCCCCc----GGUGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 115286 0.66 0.504344
Target:  5'- aGGCGGcauccGGGCGGGaguGGUCAUAGauaaGCCCc -3'
miRNA:   3'- -CCGUC-----CCCGCCC---CCGGUGUCcg--UGGG- -5'
28930 3' -66 NC_006146.1 + 155154 0.66 0.504344
Target:  5'- aGCAGcGGGCcaGGGCCACguugcuGGGCggaggaaacaGCCCc -3'
miRNA:   3'- cCGUC-CCCGccCCCGGUG------UCCG----------UGGG- -5'
28930 3' -66 NC_006146.1 + 68739 0.66 0.504344
Target:  5'- cGCGGGguGGUGGaGGCC-CAGGUGgCCa -3'
miRNA:   3'- cCGUCC--CCGCCcCCGGuGUCCGUgGG- -5'
28930 3' -66 NC_006146.1 + 57331 0.66 0.504344
Target:  5'- uGGCucucuGGGGGC-GGGGCCcCGGGUGUCg -3'
miRNA:   3'- -CCG-----UCCCCGcCCCCGGuGUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 51472 0.66 0.504344
Target:  5'- uGGagauGGGCGGGGGCUGC-GGCGUCg -3'
miRNA:   3'- -CCguc-CCCGCCCCCGGUGuCCGUGGg -5'
28930 3' -66 NC_006146.1 + 18867 0.66 0.504344
Target:  5'- gGGUGGuGGacguGCGGGGGCCuCA-GCcCCCa -3'
miRNA:   3'- -CCGUC-CC----CGCCCCCGGuGUcCGuGGG- -5'
28930 3' -66 NC_006146.1 + 29587 0.66 0.504344
Target:  5'- gGGaCAGGacccCGGGGGCuCAgcCAGGCugaACCCg -3'
miRNA:   3'- -CC-GUCCcc--GCCCCCG-GU--GUCCG---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.