miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28932 3' -69.5 NC_006146.1 + 137632 0.66 0.411051
Target:  5'- gCCGGGccACCCCccacccggagcgGGGCaGCGgcccggcggaccCGCCGGCg- -3'
miRNA:   3'- -GGCCC--UGGGG------------CCCG-CGC------------GCGGCCGga -5'
28932 3' -69.5 NC_006146.1 + 12084 0.66 0.411051
Target:  5'- gCCGGG-CCCCGGcCGUGUGCCugaacacGCUc -3'
miRNA:   3'- -GGCCCuGGGGCCcGCGCGCGGc------CGGa -5'
28932 3' -69.5 NC_006146.1 + 75797 0.66 0.411051
Target:  5'- cUCGGGcGUCUCGGGCGC-CGCCuucgaGGCCc -3'
miRNA:   3'- -GGCCC-UGGGGCCCGCGcGCGG-----CCGGa -5'
28932 3' -69.5 NC_006146.1 + 137755 0.66 0.411051
Target:  5'- gCCGGGccACCCCccacccggagcgGGGCaGCGgcccggcgaaccCGCCGGCg- -3'
miRNA:   3'- -GGCCC--UGGGG------------CCCG-CGC------------GCGGCCGga -5'
28932 3' -69.5 NC_006146.1 + 23572 0.66 0.411051
Target:  5'- -aGGGACUCa-GGCcauGCGCGCCcaguuggcgGGCCUg -3'
miRNA:   3'- ggCCCUGGGgcCCG---CGCGCGG---------CCGGA- -5'
28932 3' -69.5 NC_006146.1 + 20494 0.66 0.411051
Target:  5'- -aGGGACUCa-GGCcauGCGCGCCcaguuggcgGGCCUg -3'
miRNA:   3'- ggCCCUGGGgcCCG---CGCGCGG---------CCGGA- -5'
28932 3' -69.5 NC_006146.1 + 26650 0.66 0.411051
Target:  5'- -aGGGACUCa-GGCcauGCGCGCCcaguuggcgGGCCUg -3'
miRNA:   3'- ggCCCUGGGgcCCG---CGCGCGG---------CCGGA- -5'
28932 3' -69.5 NC_006146.1 + 14338 0.66 0.411051
Target:  5'- -aGGGACUCa-GGCcauGCGCGCCcaguuggcgGGCCUg -3'
miRNA:   3'- ggCCCUGGGgcCCG---CGCGCGG---------CCGGA- -5'
28932 3' -69.5 NC_006146.1 + 17416 0.66 0.411051
Target:  5'- -aGGGACUCa-GGCcauGCGCGCCcaguuggcgGGCCUg -3'
miRNA:   3'- ggCCCUGGGgcCCG---CGCGCGG---------CCGGA- -5'
28932 3' -69.5 NC_006146.1 + 137707 0.66 0.411051
Target:  5'- uCCGGccuccCCCCGGG-GUGC-CCgGGCCUa -3'
miRNA:   3'- -GGCCcu---GGGGCCCgCGCGcGG-CCGGA- -5'
28932 3' -69.5 NC_006146.1 + 47303 0.66 0.410272
Target:  5'- gCCGGGACuccuCCCGGGCcuccuggaugaugGCcuccaGCCgGGCCa -3'
miRNA:   3'- -GGCCCUG----GGGCCCG-------------CGcg---CGG-CCGGa -5'
28932 3' -69.5 NC_006146.1 + 26140 0.66 0.408717
Target:  5'- aCCGGGGCCCggucggaaagagcaCGGGgGCuuaaGC-GGCCUg -3'
miRNA:   3'- -GGCCCUGGG--------------GCCCgCGcg--CGgCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 70832 0.66 0.403301
Target:  5'- uCUGGGGCCaaGGGCcaaGCGgGCcCGGUg- -3'
miRNA:   3'- -GGCCCUGGggCCCG---CGCgCG-GCCGga -5'
28932 3' -69.5 NC_006146.1 + 57859 0.66 0.403301
Target:  5'- aCGuGGACCCCGaGGcCGaCGUccuGCCGGgCg -3'
miRNA:   3'- gGC-CCUGGGGC-CC-GC-GCG---CGGCCgGa -5'
28932 3' -69.5 NC_006146.1 + 162033 0.66 0.403301
Target:  5'- aCUGGGAgCCUggGGGCGgGgGCaGGCUg -3'
miRNA:   3'- -GGCCCUgGGG--CCCGCgCgCGgCCGGa -5'
28932 3' -69.5 NC_006146.1 + 122801 0.66 0.403301
Target:  5'- aCGGGcgGCCgaGGcCGCGCuGUCGGCCg -3'
miRNA:   3'- gGCCC--UGGggCCcGCGCG-CGGCCGGa -5'
28932 3' -69.5 NC_006146.1 + 63362 0.66 0.398695
Target:  5'- cCUGGGACCCCuGGGCacgaGUGUGCUGuuuaucucuguauuuGUCUa -3'
miRNA:   3'- -GGCCCUGGGG-CCCG----CGCGCGGC---------------CGGA- -5'
28932 3' -69.5 NC_006146.1 + 115908 0.66 0.398695
Target:  5'- cCCGGGgggcuuccggccACCCCGGGUacgggggcagcgguaGCgGCGgCGGCg- -3'
miRNA:   3'- -GGCCC------------UGGGGCCCG---------------CG-CGCgGCCGga -5'
28932 3' -69.5 NC_006146.1 + 147452 0.66 0.395643
Target:  5'- -gGGGGCggCUGGGgGuCGgGCUGGCCUg -3'
miRNA:   3'- ggCCCUGg-GGCCCgC-GCgCGGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 150530 0.66 0.395643
Target:  5'- -gGGGGCggCUGGGgGuCGgGCUGGCCUg -3'
miRNA:   3'- ggCCCUGg-GGCCCgC-GCgCGGCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.