miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2900 5' -54.6 NC_001493.1 + 35602 0.66 0.942219
Target:  5'- cAGCUcACGCGagaCGUGGUCACCGcacGCa -3'
miRNA:   3'- cUUGA-UGUGCg--GCGCUAGUGGCuc-CG- -5'
2900 5' -54.6 NC_001493.1 + 87667 0.66 0.941754
Target:  5'- gGAGCcgGCuccucguACGCCGCGGggggCAggucCCGGGGUa -3'
miRNA:   3'- -CUUGa-UG-------UGCGGCGCUa---GU----GGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 126582 0.66 0.937456
Target:  5'- -uGCUuCACGCCaGCcGUCAucCCGAGGg -3'
miRNA:   3'- cuUGAuGUGCGG-CGcUAGU--GGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 27951 0.66 0.937456
Target:  5'- cGAAC-AUAuCGUgGUGAUCgAUCGGGGCa -3'
miRNA:   3'- -CUUGaUGU-GCGgCGCUAG-UGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 129978 0.66 0.937456
Target:  5'- cAugUACACGUgCGCGAggACCguGAGGUc -3'
miRNA:   3'- cUugAUGUGCG-GCGCUagUGG--CUCCG- -5'
2900 5' -54.6 NC_001493.1 + 14424 0.66 0.937456
Target:  5'- cAugUACACGUgCGCGAggACCguGAGGUc -3'
miRNA:   3'- cUugAUGUGCG-GCGCUagUGG--CUCCG- -5'
2900 5' -54.6 NC_001493.1 + 11027 0.66 0.937456
Target:  5'- -uGCUuCACGCCaGCcGUCAucCCGAGGg -3'
miRNA:   3'- cuUGAuGUGCGG-CGcUAGU--GGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 121210 0.66 0.937456
Target:  5'- aGAgUACAUcggaGCCGgGuUCACCGGGGa -3'
miRNA:   3'- cUUgAUGUG----CGGCgCuAGUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 42328 0.66 0.937456
Target:  5'- -cGCcACGCGCCGUccGAUCcCCGAGa- -3'
miRNA:   3'- cuUGaUGUGCGGCG--CUAGuGGCUCcg -5'
2900 5' -54.6 NC_001493.1 + 5655 0.66 0.937456
Target:  5'- aGAgUACAUcggaGCCGgGuUCACCGGGGa -3'
miRNA:   3'- cUUgAUGUG----CGGCgCuAGUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 87182 0.66 0.936966
Target:  5'- cGAGUUGCAccuccucCGCCGCaccuUCACCG-GGCg -3'
miRNA:   3'- -CUUGAUGU-------GCGGCGcu--AGUGGCuCCG- -5'
2900 5' -54.6 NC_001493.1 + 112672 0.66 0.934481
Target:  5'- cGAGcCUGCGCccgagauccccgaugGCCuggaggaacggGCGAUC-CCGGGGCu -3'
miRNA:   3'- -CUU-GAUGUG---------------CGG-----------CGCUAGuGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 38747 0.66 0.932448
Target:  5'- cAGCUGuCugGUCGCGAcCAUCGAcuccauggccucGGCg -3'
miRNA:   3'- cUUGAU-GugCGGCGCUaGUGGCU------------CCG- -5'
2900 5' -54.6 NC_001493.1 + 60288 0.66 0.932448
Target:  5'- aGACUGgggauCGCGcCCGCGGUauucCGCgGAGGUg -3'
miRNA:   3'- cUUGAU-----GUGC-GGCGCUA----GUGgCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 39015 0.66 0.932448
Target:  5'- uGAGCUugGugaGCC-CGGUCgucaggcuGCUGAGGCa -3'
miRNA:   3'- -CUUGAugUg--CGGcGCUAG--------UGGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 113417 0.66 0.932448
Target:  5'- uGGCUGgGCGaCCGCGcGUCucuuUCGGGGUa -3'
miRNA:   3'- cUUGAUgUGC-GGCGC-UAGu---GGCUCCG- -5'
2900 5' -54.6 NC_001493.1 + 30181 0.66 0.929327
Target:  5'- gGAGCga---GCCGUGAUCAUCGAugaguuucagaagauGGCg -3'
miRNA:   3'- -CUUGaugugCGGCGCUAGUGGCU---------------CCG- -5'
2900 5' -54.6 NC_001493.1 + 21061 0.66 0.927196
Target:  5'- cGGgUACGCucCCGCGG-CACCGGGGa -3'
miRNA:   3'- cUUgAUGUGc-GGCGCUaGUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 19748 0.66 0.927196
Target:  5'- aGGgUACGCucCCGCGG-CACCGGGGa -3'
miRNA:   3'- cUUgAUGUGc-GGCGCUaGUGGCUCCg -5'
2900 5' -54.6 NC_001493.1 + 36608 0.66 0.927196
Target:  5'- -cACUGCGCuGCUgGUGGUgGCCGugGGGCu -3'
miRNA:   3'- cuUGAUGUG-CGG-CGCUAgUGGC--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.