miRNA display CGI


Results 1 - 20 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 123581 0.66 0.807024
Target:  5'- cCGGCugGAGGCCAUCaUCCaGGAG-GCCc -3'
miRNA:   3'- aGUCG--UUCCGGUAG-GGGgCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 112824 0.66 0.807024
Target:  5'- cCGGcCGGGGCCaAUgUCCCGGuGCAg- -3'
miRNA:   3'- aGUC-GUUCCGG-UAgGGGGCCuCGUgg -5'
29021 3' -59.5 NC_006146.1 + 109584 0.66 0.807024
Target:  5'- cCGGCuAGGCCA---CCCGGGcaggacgccgcGCGCCg -3'
miRNA:   3'- aGUCGuUCCGGUaggGGGCCU-----------CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 137782 0.66 0.807024
Target:  5'- cCGGguGGGCCugGUCCgCCGGAucCGCUu -3'
miRNA:   3'- aGUCguUCCGG--UAGGgGGCCUc-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 130617 0.66 0.807024
Target:  5'- cCGGCcucuuuGGCCcgCCUCCGcccGCGCCu -3'
miRNA:   3'- aGUCGuu----CCGGuaGGGGGCcu-CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 46371 0.66 0.807024
Target:  5'- aCAGCAgcucccccAGGCCcccGUCCCUCGccaGGGCcgagACCa -3'
miRNA:   3'- aGUCGU--------UCCGG---UAGGGGGC---CUCG----UGG- -5'
29021 3' -59.5 NC_006146.1 + 90098 0.66 0.801847
Target:  5'- -aGGCcguaaaugaaaaugaGGGGCC-UCCUCUGGGGUAUCu -3'
miRNA:   3'- agUCG---------------UUCCGGuAGGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 4519 0.66 0.798366
Target:  5'- cCAGCGGGGggugaCCAUCUCggugCCGGcAGcCGCCg -3'
miRNA:   3'- aGUCGUUCC-----GGUAGGG----GGCC-UC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 119881 0.66 0.798366
Target:  5'- cCAGCGAGcuuucaguucCCAUucucCCCCCGuGGCGCCc -3'
miRNA:   3'- aGUCGUUCc---------GGUA----GGGGGCcUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 33546 0.66 0.798366
Target:  5'- cCGGCuugccuGGCCcuggugcUCCUCCGGGGguCGCCg -3'
miRNA:   3'- aGUCGuu----CCGGu------AGGGGGCCUC--GUGG- -5'
29021 3' -59.5 NC_006146.1 + 119324 0.66 0.798366
Target:  5'- -uGGCucccccGGGCCc-CUCCCGGcGGCGCCc -3'
miRNA:   3'- agUCGu-----UCCGGuaGGGGGCC-UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 155569 0.66 0.798366
Target:  5'- cUCGcGCGGGGCg--CCCgCCaGGGGCACa -3'
miRNA:   3'- -AGU-CGUUCCGguaGGG-GG-CCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 139291 0.66 0.798366
Target:  5'- cCGGCcuuGAGcCCAUCCCCCGuGGUgucaGCCu -3'
miRNA:   3'- aGUCG---UUCcGGUAGGGGGCcUCG----UGG- -5'
29021 3' -59.5 NC_006146.1 + 17488 0.66 0.798366
Target:  5'- cCAGCcacaCCcgCCCCCGGgaacucccuuGGCACCc -3'
miRNA:   3'- aGUCGuuccGGuaGGGGGCC----------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 42068 0.66 0.798366
Target:  5'- -uGGCcGGGCUuaccugCUCCUGGAccGCGCCg -3'
miRNA:   3'- agUCGuUCCGGua----GGGGGCCU--CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 1155 0.66 0.798366
Target:  5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3'
miRNA:   3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 2087 0.66 0.798366
Target:  5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3'
miRNA:   3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 3019 0.66 0.798366
Target:  5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3'
miRNA:   3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 12077 0.66 0.789566
Target:  5'- --uGCgAGGGCCGggCCCCGGccguGUGCCu -3'
miRNA:   3'- aguCG-UUCCGGUagGGGGCCu---CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 60875 0.66 0.789566
Target:  5'- gUCA-CGAGGCCAUCUUUgaucaggaCGGAGC-CCu -3'
miRNA:   3'- -AGUcGUUCCGGUAGGGG--------GCCUCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.