miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 148145 0.67 0.829073
Target:  5'- gGCUUCGugcuGGUCAGGGCCCgGGUCu- -3'
miRNA:   3'- gCGAAGUu---CUGGUUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 148041 0.71 0.568449
Target:  5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3'
miRNA:   3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5'
29024 3' -57.6 NC_006146.1 + 147810 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 147441 0.66 0.868278
Target:  5'- gGC--CAcGGCCAGGGCCUcguaGGCCGa -3'
miRNA:   3'- gCGaaGUuCUGGUUCCGGGa---CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 146634 0.69 0.679354
Target:  5'- gGCc-CGAGACCuggGGGCCCgGGCCu- -3'
miRNA:   3'- gCGaaGUUCUGGu--UCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 145128 0.71 0.598554
Target:  5'- gGCcu--GGGCC-AGGCUCUGGCCGg -3'
miRNA:   3'- gCGaaguUCUGGuUCCGGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 144963 0.71 0.568449
Target:  5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3'
miRNA:   3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5'
29024 3' -57.6 NC_006146.1 + 144732 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 143556 0.69 0.679354
Target:  5'- gGCc-CGAGACCuggGGGCCCgGGCCu- -3'
miRNA:   3'- gCGaaGUUCUGGu--UCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 141885 0.71 0.568449
Target:  5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3'
miRNA:   3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5'
29024 3' -57.6 NC_006146.1 + 141655 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 138751 0.67 0.803394
Target:  5'- aGCUgagCGGccuGCCAcGGCCCUGGCUa- -3'
miRNA:   3'- gCGAa--GUUc--UGGUuCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 136759 0.66 0.860828
Target:  5'- uCGC--CGGGGCUccggGAGGCCC-GGCCGc -3'
miRNA:   3'- -GCGaaGUUCUGG----UUCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 131631 0.7 0.629889
Target:  5'- cCGUcUCGAGuCCGGGGCCCacacccguuccucagGGCCGa -3'
miRNA:   3'- -GCGaAGUUCuGGUUCCGGGa--------------CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 130089 0.67 0.829073
Target:  5'- aGC-UCAuGGCCAAGGCCaUUGacGCCGg -3'
miRNA:   3'- gCGaAGUuCUGGUUCCGG-GAC--CGGCa -5'
29024 3' -57.6 NC_006146.1 + 128099 0.69 0.679354
Target:  5'- aCGCUcugCGAGACCGccaaCCUGGCCGa -3'
miRNA:   3'- -GCGAa--GUUCUGGUuccgGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 127767 0.78 0.243883
Target:  5'- uCGCcgaccUCAGGGCCAAGGCaCCUGGCgGa -3'
miRNA:   3'- -GCGa----AGUUCUGGUUCCG-GGACCGgCa -5'
29024 3' -57.6 NC_006146.1 + 126241 0.66 0.853177
Target:  5'- cCGUUUUggGAcCCAGGcGCCCgGGCUu- -3'
miRNA:   3'- -GCGAAGuuCU-GGUUC-CGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 125941 0.67 0.829073
Target:  5'- cCGCggUCGAGucccCCGGGGCcuccccgcgccCCUGGCCa- -3'
miRNA:   3'- -GCGa-AGUUCu---GGUUCCG-----------GGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 125852 0.69 0.719099
Target:  5'- ---aUCAAGcCCAAGGCCCgcgaGGCCc- -3'
miRNA:   3'- gcgaAGUUCuGGUUCCGGGa---CCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.