miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 5' -56.5 NC_006146.1 + 49798 0.66 0.919113
Target:  5'- aGGG-GCAGGaagaugggugGCUgUCGUCGAuCGCCCUg -3'
miRNA:   3'- aCCCgCGUCU----------UGA-GGUAGUU-GCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 156622 0.66 0.919113
Target:  5'- aGGGCGCuGcACgcgCgGUCAuucuguCGCCUCa -3'
miRNA:   3'- aCCCGCGuCuUGa--GgUAGUu-----GCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 163133 0.66 0.919113
Target:  5'- aGGGCGCAGAGCacgaCCAggCAGauUCUCa -3'
miRNA:   3'- aCCCGCGUCUUGa---GGUa-GUUgcGGGG- -5'
29028 5' -56.5 NC_006146.1 + 69081 0.66 0.919113
Target:  5'- cGGGCcccGCcGAACUCguCGUCGA-GCCCUc -3'
miRNA:   3'- aCCCG---CGuCUUGAG--GUAGUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 56591 0.66 0.919113
Target:  5'- cGGGCGCcGAGCccgccgccggucUCCucgcCGGCGUCCa -3'
miRNA:   3'- aCCCGCGuCUUG------------AGGua--GUUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 41500 0.66 0.919113
Target:  5'- gGGGUGCgcgGGGACgacgcCCGgcuGACGCCCg -3'
miRNA:   3'- aCCCGCG---UCUUGa----GGUag-UUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 99992 0.66 0.917422
Target:  5'- cUGGGCGguGGuuguugcugacaucGC-CCAUCuuC-CCCCg -3'
miRNA:   3'- -ACCCGCguCU--------------UGaGGUAGuuGcGGGG- -5'
29028 5' -56.5 NC_006146.1 + 45684 0.66 0.913396
Target:  5'- aGGGaGCGGAaggGCUCUG--AGCGCCCg -3'
miRNA:   3'- aCCCgCGUCU---UGAGGUagUUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 125217 0.66 0.913396
Target:  5'- cGGGCGCucAGAGC-CCuUC--CGCUCCc -3'
miRNA:   3'- aCCCGCG--UCUUGaGGuAGuuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 55204 0.66 0.913396
Target:  5'- cGGGCGagcguCUCCuGUCGGcCGCCUCu -3'
miRNA:   3'- aCCCGCgucuuGAGG-UAGUU-GCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 55992 0.66 0.913396
Target:  5'- -cGGCGUAG-ACggugaCCAgcCAGCGUCCCa -3'
miRNA:   3'- acCCGCGUCuUGa----GGUa-GUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 232 0.66 0.913396
Target:  5'- gGGGCGCcccuGGcCUCCcccgcgccgAUCuGCGCgCCCa -3'
miRNA:   3'- aCCCGCGu---CUuGAGG---------UAGuUGCG-GGG- -5'
29028 5' -56.5 NC_006146.1 + 70590 0.66 0.912224
Target:  5'- aGGuGCGCAGGGggggaaccugugcCUCCA-CGGCcucugcugccuccGCCCCa -3'
miRNA:   3'- aCC-CGCGUCUU-------------GAGGUaGUUG-------------CGGGG- -5'
29028 5' -56.5 NC_006146.1 + 167754 0.66 0.907446
Target:  5'- aGGGCGCAGGGg-CCGggugggcgcgCAugGCUCg -3'
miRNA:   3'- aCCCGCGUCUUgaGGUa---------GUugCGGGg -5'
29028 5' -56.5 NC_006146.1 + 123466 0.66 0.907446
Target:  5'- -uGGCcCAGAACUCCAUgGACGgCa- -3'
miRNA:   3'- acCCGcGUCUUGAGGUAgUUGCgGgg -5'
29028 5' -56.5 NC_006146.1 + 43900 0.66 0.907446
Target:  5'- cUGGGagcccaCAGAGCUCCGggaccgCGuCGCCCg -3'
miRNA:   3'- -ACCCgc----GUCUUGAGGUa-----GUuGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 99791 0.66 0.907446
Target:  5'- gGGGCGCAGGugUcucggaagggcaCCGgcgaggggguguUCGGgGCCUCg -3'
miRNA:   3'- aCCCGCGUCUugA------------GGU------------AGUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 71057 0.66 0.906838
Target:  5'- --cGCGCGGGgacgucuucaccuAUUCCAcCGAgGCCCCg -3'
miRNA:   3'- accCGCGUCU-------------UGAGGUaGUUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 63360 0.66 0.903765
Target:  5'- cUGGGCaCAGGGCccUCCuggggcUCAuguuuaaaccagaggACGCCCCc -3'
miRNA:   3'- -ACCCGcGUCUUG--AGGu-----AGU---------------UGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 123114 0.66 0.901266
Target:  5'- gUGGGCGCuagacGGGGCUUUca-GACGgCCCu -3'
miRNA:   3'- -ACCCGCG-----UCUUGAGGuagUUGCgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.