miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29047 3' -63 NC_006146.1 + 158269 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 137913 0.66 0.614934
Target:  5'- -gGGCCGgggguUCCGGgggcagCCGCGaCCcAGCGCg -3'
miRNA:   3'- uaCCGGC-----GGGCCa-----GGUGC-GGaUCGUG- -5'
29047 3' -63 NC_006146.1 + 61518 0.66 0.614934
Target:  5'- --uGCCGCCCuGUcauucagaaaCCugGCCUacgGGCGCa -3'
miRNA:   3'- uacCGGCGGGcCA----------GGugCGGA---UCGUG- -5'
29047 3' -63 NC_006146.1 + 41590 0.66 0.614934
Target:  5'- cUGGCCgaggcggagagGCCCGGggggcuggUCCGCuggGCCcgGGCGCa -3'
miRNA:   3'- uACCGG-----------CGGGCC--------AGGUG---CGGa-UCGUG- -5'
29047 3' -63 NC_006146.1 + 142878 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 145956 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 155190 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 152112 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 149034 0.66 0.614934
Target:  5'- -gGGCCugGCCgGGUCUAaggugGCCUGGCc- -3'
miRNA:   3'- uaCCGG--CGGgCCAGGUg----CGGAUCGug -5'
29047 3' -63 NC_006146.1 + 90118 0.66 0.605107
Target:  5'- -gGGCCuCCUcugGGguaucUCCAUGCCUGGUGCg -3'
miRNA:   3'- uaCCGGcGGG---CC-----AGGUGCGGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 112901 0.66 0.605107
Target:  5'- -aGGCCGagaCCCGGgccUCCAgcuCGuCCUGGUGCg -3'
miRNA:   3'- uaCCGGC---GGGCC---AGGU---GC-GGAUCGUG- -5'
29047 3' -63 NC_006146.1 + 68111 0.66 0.605107
Target:  5'- -gGGCgGCcagCCGGUCCGCGgUgagcGGCGCc -3'
miRNA:   3'- uaCCGgCG---GGCCAGGUGCgGa---UCGUG- -5'
29047 3' -63 NC_006146.1 + 160617 0.66 0.605107
Target:  5'- -cGGCCGCCUGG--CAUGCC-AGCu- -3'
miRNA:   3'- uaCCGGCGGGCCagGUGCGGaUCGug -5'
29047 3' -63 NC_006146.1 + 105600 0.66 0.602162
Target:  5'- -aGGCCGCaagaggcagcgcagCCaGGUCCACaGCC--GCACg -3'
miRNA:   3'- uaCCGGCG--------------GG-CCAGGUG-CGGauCGUG- -5'
29047 3' -63 NC_006146.1 + 42067 0.66 0.601181
Target:  5'- cUGGCCGggcuuaccugcuCCUGGaCCGCGCCguccuucgcggacGGCGCa -3'
miRNA:   3'- uACCGGC------------GGGCCaGGUGCGGa------------UCGUG- -5'
29047 3' -63 NC_006146.1 + 135419 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135790 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135976 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 135883 0.66 0.595299
Target:  5'- gGUGGCCgggccgcuGCCgGGUCCGCuGCCcGGUc- -3'
miRNA:   3'- -UACCGG--------CGGgCCAGGUG-CGGaUCGug -5'
29047 3' -63 NC_006146.1 + 161752 0.66 0.595299
Target:  5'- gGUGGCgGCUgaGGUCCgaggggGCGCCUgGGCGg -3'
miRNA:   3'- -UACCGgCGGg-CCAGG------UGCGGA-UCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.