Results 1 - 20 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 136817 | 0.66 | 0.678457 |
Target: 5'- uCGCGGCUGCCC-CCCGGGacccccGGCcCCGu -3' miRNA: 3'- -GUGUUGGUGGGcGGGCCCc-----UCGaGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 124180 | 0.66 | 0.668837 |
Target: 5'- gGCcuCCGCCCGCCUc-GGAGCcgCCGc -3' miRNA: 3'- gUGuuGGUGGGCGGGccCCUCGa-GGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 68112 | 0.66 | 0.668837 |
Target: 5'- gGCGGCCAgCCgGUCCGcGGuGAGCggcgCCa -3' miRNA: 3'- gUGUUGGU-GGgCGGGC-CC-CUCGa---GGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 33179 | 0.66 | 0.668837 |
Target: 5'- cCAgAACCggguagGCCCGggcaccCCCGGGGGGaggCCGg -3' miRNA: 3'- -GUgUUGG------UGGGC------GGGCCCCUCga-GGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 116187 | 0.66 | 0.665945 |
Target: 5'- -uCGGCCGCCCuGaCCCGGGcccgccguccccucGAGCUCa- -3' miRNA: 3'- guGUUGGUGGG-C-GGGCCC--------------CUCGAGgc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 25248 | 0.66 | 0.65919 |
Target: 5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3' miRNA: 3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 55232 | 0.66 | 0.65919 |
Target: 5'- uGCcuCCGCCCucagguacgucGCCCGGGcGGC-CCGg -3' miRNA: 3'- gUGuuGGUGGG-----------CGGGCCCcUCGaGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 22409 | 0.66 | 0.65919 |
Target: 5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3' miRNA: 3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 25487 | 0.66 | 0.65919 |
Target: 5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3' miRNA: 3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 134692 | 0.66 | 0.65919 |
Target: 5'- -cCGGCUugCgCuCCCGGGGAGC-CCa -3' miRNA: 3'- guGUUGGugG-GcGGGCCCCUCGaGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 16253 | 0.66 | 0.65919 |
Target: 5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3' miRNA: 3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 19331 | 0.66 | 0.65919 |
Target: 5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3' miRNA: 3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 16014 | 0.66 | 0.65919 |
Target: 5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3' miRNA: 3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 28326 | 0.66 | 0.65919 |
Target: 5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3' miRNA: 3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 19092 | 0.66 | 0.65919 |
Target: 5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3' miRNA: 3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 142672 | 0.66 | 0.65919 |
Target: 5'- uCGCAGCCACCUGCCCuccggcugGGucGGAcGgUCUGg -3' miRNA: 3'- -GUGUUGGUGGGCGGG--------CC--CCU-CgAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 28565 | 0.66 | 0.65919 |
Target: 5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3' miRNA: 3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 12937 | 0.66 | 0.65919 |
Target: 5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3' miRNA: 3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 13175 | 0.66 | 0.65919 |
Target: 5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3' miRNA: 3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 22170 | 0.66 | 0.65919 |
Target: 5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3' miRNA: 3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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