miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 5' -62.6 NC_006146.1 + 136817 0.66 0.678457
Target:  5'- uCGCGGCUGCCC-CCCGGGacccccGGCcCCGu -3'
miRNA:   3'- -GUGUUGGUGGGcGGGCCCc-----UCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 124180 0.66 0.668837
Target:  5'- gGCcuCCGCCCGCCUc-GGAGCcgCCGc -3'
miRNA:   3'- gUGuuGGUGGGCGGGccCCUCGa-GGC- -5'
29064 5' -62.6 NC_006146.1 + 33179 0.66 0.668837
Target:  5'- cCAgAACCggguagGCCCGggcaccCCCGGGGGGaggCCGg -3'
miRNA:   3'- -GUgUUGG------UGGGC------GGGCCCCUCga-GGC- -5'
29064 5' -62.6 NC_006146.1 + 68112 0.66 0.668837
Target:  5'- gGCGGCCAgCCgGUCCGcGGuGAGCggcgCCa -3'
miRNA:   3'- gUGUUGGU-GGgCGGGC-CC-CUCGa---GGc -5'
29064 5' -62.6 NC_006146.1 + 116187 0.66 0.665945
Target:  5'- -uCGGCCGCCCuGaCCCGGGcccgccguccccucGAGCUCa- -3'
miRNA:   3'- guGUUGGUGGG-C-GGGCCC--------------CUCGAGgc -5'
29064 5' -62.6 NC_006146.1 + 28326 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 142672 0.66 0.65919
Target:  5'- uCGCAGCCACCUGCCCuccggcugGGucGGAcGgUCUGg -3'
miRNA:   3'- -GUGUUGGUGGGCGGG--------CC--CCU-CgAGGC- -5'
29064 5' -62.6 NC_006146.1 + 13175 0.66 0.65919
Target:  5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3'
miRNA:   3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 16253 0.66 0.65919
Target:  5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3'
miRNA:   3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 19331 0.66 0.65919
Target:  5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3'
miRNA:   3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 25487 0.66 0.65919
Target:  5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3'
miRNA:   3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 25248 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 22170 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 19092 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 12937 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 22409 0.66 0.65919
Target:  5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3'
miRNA:   3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 134692 0.66 0.65919
Target:  5'- -cCGGCUugCgCuCCCGGGGAGC-CCa -3'
miRNA:   3'- guGUUGGugG-GcGGGCCCCUCGaGGc -5'
29064 5' -62.6 NC_006146.1 + 55232 0.66 0.65919
Target:  5'- uGCcuCCGCCCucagguacgucGCCCGGGcGGC-CCGg -3'
miRNA:   3'- gUGuuGGUGGG-----------CGGGCCCcUCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 16014 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 24689 0.66 0.65919
Target:  5'- cCAUGGCCGCCgCuuacCCCGGaGGAGC-CCa -3'
miRNA:   3'- -GUGUUGGUGG-Gc---GGGCC-CCUCGaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.