miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 3' -56.7 NC_006146.1 + 24706 0.66 0.915303
Target:  5'- -cCCGGAGGagcCCAUGCagCACUAgcgUCCa -3'
miRNA:   3'- ucGGCCUCCaa-GGUGCG--GUGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 110256 0.66 0.915303
Target:  5'- aAGCCaGGAGa-UCUugGCCugCAgagCCc -3'
miRNA:   3'- -UCGG-CCUCcaAGGugCGGugGUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 14680 0.66 0.915303
Target:  5'- cGGCCGaGGGGgcCCGCGucuccugcaaCCACCuggcggUCCc -3'
miRNA:   3'- -UCGGC-CUCCaaGGUGC----------GGUGGua----AGG- -5'
29065 3' -56.7 NC_006146.1 + 130305 0.66 0.915303
Target:  5'- cGGCaugCGGAGGUUCgGcCGCCcaggGCCAggaCCu -3'
miRNA:   3'- -UCG---GCCUCCAAGgU-GCGG----UGGUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 15025 0.66 0.914729
Target:  5'- uGCCagGGAGGggcgCCugGCCagggcccGCCGggCCu -3'
miRNA:   3'- uCGG--CCUCCaa--GGugCGG-------UGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 52091 0.66 0.909463
Target:  5'- cGGUCGGGGGccggCgAgGCCAUCuGUUCCc -3'
miRNA:   3'- -UCGGCCUCCaa--GgUgCGGUGG-UAAGG- -5'
29065 3' -56.7 NC_006146.1 + 141492 0.66 0.909463
Target:  5'- uGCUGGAGGUcugCCACuuGCCuugaGCCuaAUUCUg -3'
miRNA:   3'- uCGGCCUCCAa--GGUG--CGG----UGG--UAAGG- -5'
29065 3' -56.7 NC_006146.1 + 33246 0.66 0.909463
Target:  5'- -uCCGGGGGUgggggcUCCACGaacCCGCUugccUUCCa -3'
miRNA:   3'- ucGGCCUCCA------AGGUGC---GGUGGu---AAGG- -5'
29065 3' -56.7 NC_006146.1 + 41771 0.66 0.909463
Target:  5'- cGCCGGAGGccCUGCGCC-CgGgcgCCc -3'
miRNA:   3'- uCGGCCUCCaaGGUGCGGuGgUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 22966 0.66 0.907667
Target:  5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3'
miRNA:   3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 13733 0.66 0.907667
Target:  5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3'
miRNA:   3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 16811 0.66 0.907667
Target:  5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3'
miRNA:   3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 26044 0.66 0.907667
Target:  5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3'
miRNA:   3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 19889 0.66 0.907667
Target:  5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3'
miRNA:   3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 29122 0.66 0.907667
Target:  5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3'
miRNA:   3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 19601 0.66 0.90585
Target:  5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3'
miRNA:   3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 13445 0.66 0.90585
Target:  5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3'
miRNA:   3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 70673 0.66 0.90585
Target:  5'- cAGCgGGAGGUgaugaucacucaggCCACggGCCGCCuggugUCUc -3'
miRNA:   3'- -UCGgCCUCCAa-------------GGUG--CGGUGGua---AGG- -5'
29065 3' -56.7 NC_006146.1 + 22679 0.66 0.90585
Target:  5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3'
miRNA:   3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 28835 0.66 0.90585
Target:  5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3'
miRNA:   3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.