Results 1 - 20 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29065 | 3' | -56.7 | NC_006146.1 | + | 586 | 0.69 | 0.769464 |
Target: 5'- gGGCCGGGGGcgcggCC-CGgCGCCAgcCCu -3' miRNA: 3'- -UCGGCCUCCaa---GGuGCgGUGGUaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 1227 | 0.69 | 0.78774 |
Target: 5'- -cCCGGGGGcgggCCACGCgCGCCcg-CCa -3' miRNA: 3'- ucGGCCUCCaa--GGUGCG-GUGGuaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 1517 | 0.69 | 0.769464 |
Target: 5'- gGGCCGGGGGcgcggCC-CGgCGCCAgcCCu -3' miRNA: 3'- -UCGGCCUCCaa---GGuGCgGUGGUaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 2159 | 0.69 | 0.78774 |
Target: 5'- -cCCGGGGGcgggCCACGCgCGCCcg-CCa -3' miRNA: 3'- ucGGCCUCCaa--GGUGCG-GUGGuaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 2449 | 0.69 | 0.769464 |
Target: 5'- gGGCCGGGGGcgcggCC-CGgCGCCAgcCCu -3' miRNA: 3'- -UCGGCCUCCaa---GGuGCgGUGGUaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 3091 | 0.69 | 0.78774 |
Target: 5'- -cCCGGGGGcgggCCACGCgCGCCcg-CCa -3' miRNA: 3'- ucGGCCUCCaa--GGUGCG-GUGGuaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 3381 | 0.69 | 0.769464 |
Target: 5'- gGGCCGGGGGcgcggCC-CGgCGCCAgcCCu -3' miRNA: 3'- -UCGGCCUCCaa---GGuGCgGUGGUaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 5076 | 0.74 | 0.466304 |
Target: 5'- cGuuGGAGGcgUCCACGCgGCCAgggacgCCc -3' miRNA: 3'- uCggCCUCCa-AGGUGCGgUGGUaa----GG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 11178 | 0.73 | 0.571994 |
Target: 5'- cGCCucuacgGGGGGaaCCugGUgGCCAUUCCa -3' miRNA: 3'- uCGG------CCUCCaaGGugCGgUGGUAAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 11535 | 0.66 | 0.897101 |
Target: 5'- gAGCUGGcGGUcagCUACGCCcccGCCAUgCUg -3' miRNA: 3'- -UCGGCCuCCAa--GGUGCGG---UGGUAaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 12754 | 0.72 | 0.601986 |
Target: 5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3' miRNA: 3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 13445 | 0.66 | 0.90585 |
Target: 5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3' miRNA: 3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 13733 | 0.66 | 0.907667 |
Target: 5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3' miRNA: 3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 13847 | 0.69 | 0.778666 |
Target: 5'- cGGCCGGAGGgaCCccgGCGgCCcgguguGCCAgcgUCCc -3' miRNA: 3'- -UCGGCCUCCaaGG---UGC-GG------UGGUa--AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 14679 | 0.71 | 0.672378 |
Target: 5'- gGGCCcaGGGGGgUUCGCGUUGCCAggCCa -3' miRNA: 3'- -UCGG--CCUCCaAGGUGCGGUGGUaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 14680 | 0.66 | 0.915303 |
Target: 5'- cGGCCGaGGGGgcCCGCGucuccugcaaCCACCuggcggUCCc -3' miRNA: 3'- -UCGGC-CUCCaaGGUGC----------GGUGGua----AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 15025 | 0.66 | 0.914729 |
Target: 5'- uGCCagGGAGGggcgCCugGCCagggcccGCCGggCCu -3' miRNA: 3'- uCGG--CCUCCaa--GGugCGG-------UGGUaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 15833 | 0.72 | 0.601986 |
Target: 5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3' miRNA: 3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 15885 | 0.67 | 0.854779 |
Target: 5'- uGCCGGAGGgcUCgCugGCCucgaGCCAgcaacUUCUg -3' miRNA: 3'- uCGGCCUCCa-AG-GugCGG----UGGU-----AAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 16523 | 0.66 | 0.90585 |
Target: 5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3' miRNA: 3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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