miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 4516 0.65 0.82323
Target:  5'- -gGGCCAGCgGGGGgugaccauCUCGGugccggcAGCCgCCg -3'
miRNA:   3'- aaCUGGUCGgUCCU--------GAGCU-------UCGGgGG- -5'
29067 3' -58.8 NC_006146.1 + 84545 0.65 0.82155
Target:  5'- -cGGCCAGCUgacggaugacgugaAGGAUgUGAGGgCCCUg -3'
miRNA:   3'- aaCUGGUCGG--------------UCCUGaGCUUCgGGGG- -5'
29067 3' -58.8 NC_006146.1 + 19998 0.66 0.815619
Target:  5'- -aGGCCGGCCggaGGGACccCGGcGGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 23076 0.66 0.815619
Target:  5'- -aGGCCGGCCggaGGGACccCGGcGGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 26154 0.66 0.815619
Target:  5'- -aGGCCGGCCggaGGGACccCGGcGGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 130861 0.66 0.815619
Target:  5'- -gGACaC-GCC-GGAgUCGGcuacGGCCCCCa -3'
miRNA:   3'- aaCUG-GuCGGuCCUgAGCU----UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 93602 0.66 0.815619
Target:  5'- -cGACCcGCCGGG-CUCcuGggGCugcuguccuCCCCg -3'
miRNA:   3'- aaCUGGuCGGUCCuGAG--CuuCG---------GGGG- -5'
29067 3' -58.8 NC_006146.1 + 13843 0.66 0.815619
Target:  5'- -aGGCCGGCCggaGGGACccCGGcGGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 55524 0.66 0.815619
Target:  5'- -cGAgCGGCCAGGGcCUCc-AGCUCCg -3'
miRNA:   3'- aaCUgGUCGGUCCU-GAGcuUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 16921 0.66 0.815619
Target:  5'- -aGGCCGGCCggaGGGACccCGGcGGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 86321 0.66 0.815619
Target:  5'- -aGGCCcuGGgCAGGGuCUUGAucagGGCCCUCa -3'
miRNA:   3'- aaCUGG--UCgGUCCU-GAGCU----UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 45670 0.66 0.815619
Target:  5'- -aGACCGucuccGCCAGGgagcggaaggGCUCuGAGCgCCCg -3'
miRNA:   3'- aaCUGGU-----CGGUCC----------UGAGcUUCGgGGG- -5'
29067 3' -58.8 NC_006146.1 + 114156 0.66 0.815619
Target:  5'- -cGAUCAGgCCccGGACgucccgcgCGAauucGGCCCCCu -3'
miRNA:   3'- aaCUGGUC-GGu-CCUGa-------GCU----UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 24284 0.66 0.815619
Target:  5'- gUGACCcuGGCCgGGGGCUgGAcGCuguuuCCCCu -3'
miRNA:   3'- aACUGG--UCGG-UCCUGAgCUuCG-----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 61922 0.66 0.815619
Target:  5'- -cGGCgGGCCaucaGGGGCUCcaGGGCCCUg -3'
miRNA:   3'- aaCUGgUCGG----UCCUGAGc-UUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 29232 0.66 0.815619
Target:  5'- -aGGCCGGCCggaGGGACccCGGcGGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 51832 0.66 0.815619
Target:  5'- -gGGgCGGCguggaggGGGGCUCGggGCCuggCCCg -3'
miRNA:   3'- aaCUgGUCGg------UCCUGAGCuuCGG---GGG- -5'
29067 3' -58.8 NC_006146.1 + 110109 0.66 0.815619
Target:  5'- -gGACCAgGCCcuGGACcUGGuccGGCUCCCa -3'
miRNA:   3'- aaCUGGU-CGGu-CCUGaGCU---UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 117174 0.66 0.814766
Target:  5'- -cGGCgCAGCCgcggcucccggagAGGACggGGAacguGCCCCCg -3'
miRNA:   3'- aaCUG-GUCGG-------------UCCUGagCUU----CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 11624 0.66 0.80701
Target:  5'- -cGACU-GCgAGGGCccCGAGGCCCgCg -3'
miRNA:   3'- aaCUGGuCGgUCCUGa-GCUUCGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.