Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29085 | 3' | -51.5 | NC_006146.1 | + | 165806 | 0.66 | 0.993018 |
Target: 5'- cGGCCggcuaGggGGGCGUcccuGGCcGCGUGg- -3' miRNA: 3'- -CCGGag---CuuUUCGCA----CCGuUGUACgu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 151486 | 0.66 | 0.993018 |
Target: 5'- uGGCUUCGAAGAuC-UGGCAccCGUGCu -3' miRNA: 3'- -CCGGAGCUUUUcGcACCGUu-GUACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 44384 | 0.66 | 0.993018 |
Target: 5'- cGCC-CGggGGGCGUGuGgGGCcggGCAc -3' miRNA: 3'- cCGGaGCuuUUCGCAC-CgUUGua-CGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 45169 | 0.66 | 0.993018 |
Target: 5'- aGGCCUCGGAAucGGC--GGCGGCGc--- -3' miRNA: 3'- -CCGGAGCUUU--UCGcaCCGUUGUacgu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 40821 | 0.66 | 0.993018 |
Target: 5'- uGGCCUUGGccauGAGCuUGGUAAgGgGCAg -3' miRNA: 3'- -CCGGAGCUu---UUCGcACCGUUgUaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 143466 | 0.66 | 0.993018 |
Target: 5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 146544 | 0.66 | 0.993018 |
Target: 5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 149622 | 0.66 | 0.993018 |
Target: 5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 155777 | 0.66 | 0.993018 |
Target: 5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 128893 | 0.66 | 0.991967 |
Target: 5'- gGGCC-CGAAc-GCG-GGCuuCGUGCu -3' miRNA: 3'- -CCGGaGCUUuuCGCaCCGuuGUACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 113702 | 0.66 | 0.991967 |
Target: 5'- cGGCC-CGggGacGGCGgcGGCAGCcgGg- -3' miRNA: 3'- -CCGGaGCuuU--UCGCa-CCGUUGuaCgu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 60666 | 0.66 | 0.991967 |
Target: 5'- uGGCUUCGugacAAG-GUGGCGGC-UGCc -3' miRNA: 3'- -CCGGAGCuu--UUCgCACCGUUGuACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 48001 | 0.66 | 0.991967 |
Target: 5'- uGGCUgguggCGGGAGGCuUGGCGGgGgagGCAc -3' miRNA: 3'- -CCGGa----GCUUUUCGcACCGUUgUa--CGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 143717 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 146795 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 149873 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 152951 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 156029 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 152688 | 0.66 | 0.990793 |
Target: 5'- aGGUCUCGAAGGggcccugagauGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGAGCUUUU-----------CgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 53793 | 0.66 | 0.990793 |
Target: 5'- gGGCCUCGGcccGCGcGGCGucCAUaGCGg -3' miRNA: 3'- -CCGGAGCUuuuCGCaCCGUu-GUA-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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