miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 3' -51.5 NC_006146.1 + 165806 0.66 0.993018
Target:  5'- cGGCCggcuaGggGGGCGUcccuGGCcGCGUGg- -3'
miRNA:   3'- -CCGGag---CuuUUCGCA----CCGuUGUACgu -5'
29085 3' -51.5 NC_006146.1 + 151486 0.66 0.993018
Target:  5'- uGGCUUCGAAGAuC-UGGCAccCGUGCu -3'
miRNA:   3'- -CCGGAGCUUUUcGcACCGUu-GUACGu -5'
29085 3' -51.5 NC_006146.1 + 44384 0.66 0.993018
Target:  5'- cGCC-CGggGGGCGUGuGgGGCcggGCAc -3'
miRNA:   3'- cCGGaGCuuUUCGCAC-CgUUGua-CGU- -5'
29085 3' -51.5 NC_006146.1 + 45169 0.66 0.993018
Target:  5'- aGGCCUCGGAAucGGC--GGCGGCGc--- -3'
miRNA:   3'- -CCGGAGCUUU--UCGcaCCGUUGUacgu -5'
29085 3' -51.5 NC_006146.1 + 40821 0.66 0.993018
Target:  5'- uGGCCUUGGccauGAGCuUGGUAAgGgGCAg -3'
miRNA:   3'- -CCGGAGCUu---UUCGcACCGUUgUaCGU- -5'
29085 3' -51.5 NC_006146.1 + 143466 0.66 0.993018
Target:  5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 146544 0.66 0.993018
Target:  5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 149622 0.66 0.993018
Target:  5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 155777 0.66 0.993018
Target:  5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 128893 0.66 0.991967
Target:  5'- gGGCC-CGAAc-GCG-GGCuuCGUGCu -3'
miRNA:   3'- -CCGGaGCUUuuCGCaCCGuuGUACGu -5'
29085 3' -51.5 NC_006146.1 + 113702 0.66 0.991967
Target:  5'- cGGCC-CGggGacGGCGgcGGCAGCcgGg- -3'
miRNA:   3'- -CCGGaGCuuU--UCGCa-CCGUUGuaCgu -5'
29085 3' -51.5 NC_006146.1 + 60666 0.66 0.991967
Target:  5'- uGGCUUCGugacAAG-GUGGCGGC-UGCc -3'
miRNA:   3'- -CCGGAGCuu--UUCgCACCGUUGuACGu -5'
29085 3' -51.5 NC_006146.1 + 48001 0.66 0.991967
Target:  5'- uGGCUgguggCGGGAGGCuUGGCGGgGgagGCAc -3'
miRNA:   3'- -CCGGa----GCUUUUCGcACCGUUgUa--CGU- -5'
29085 3' -51.5 NC_006146.1 + 143717 0.66 0.991967
Target:  5'- gGGCCUCGGAGGGCcUGGagg---GCu -3'
miRNA:   3'- -CCGGAGCUUUUCGcACCguuguaCGu -5'
29085 3' -51.5 NC_006146.1 + 146795 0.66 0.991967
Target:  5'- gGGCCUCGGAGGGCcUGGagg---GCu -3'
miRNA:   3'- -CCGGAGCUUUUCGcACCguuguaCGu -5'
29085 3' -51.5 NC_006146.1 + 149873 0.66 0.991967
Target:  5'- gGGCCUCGGAGGGCcUGGagg---GCu -3'
miRNA:   3'- -CCGGAGCUUUUCGcACCguuguaCGu -5'
29085 3' -51.5 NC_006146.1 + 152951 0.66 0.991967
Target:  5'- gGGCCUCGGAGGGCcUGGagg---GCu -3'
miRNA:   3'- -CCGGAGCUUUUCGcACCguuguaCGu -5'
29085 3' -51.5 NC_006146.1 + 156029 0.66 0.991967
Target:  5'- gGGCCUCGGAGGGCcUGGagg---GCu -3'
miRNA:   3'- -CCGGAGCUUUUCGcACCguuguaCGu -5'
29085 3' -51.5 NC_006146.1 + 152688 0.66 0.990793
Target:  5'- aGGUCUCGAAGGggcccugagauGgGUGGCugUGUGUAg -3'
miRNA:   3'- -CCGGAGCUUUU-----------CgCACCGuuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 53793 0.66 0.990793
Target:  5'- gGGCCUCGGcccGCGcGGCGucCAUaGCGg -3'
miRNA:   3'- -CCGGAGCUuuuCGCaCCGUu-GUA-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.