miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 164357 0.66 0.879567
Target:  5'- uCUCcuuUCUCCuCACGCCCgCCaucuGGUg -3'
miRNA:   3'- -GAGuuuAGAGG-GUGCGGGgGGcu--CCG- -5'
29085 5' -58 NC_006146.1 + 160988 0.66 0.879567
Target:  5'- gCUCGcgggCUCCguCGCCUCCUGccuGGCc -3'
miRNA:   3'- -GAGUuua-GAGGguGCGGGGGGCu--CCG- -5'
29085 5' -58 NC_006146.1 + 116677 0.66 0.879567
Target:  5'- -cCAGAUUUCCCACGUUCUCaauaaacuGGGCu -3'
miRNA:   3'- gaGUUUAGAGGGUGCGGGGGgc------UCCG- -5'
29085 5' -58 NC_006146.1 + 13064 0.66 0.879567
Target:  5'- gCUCGGug--CCCGuC-CCCUCCGGGGCc -3'
miRNA:   3'- -GAGUUuagaGGGU-GcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 10120 0.66 0.879567
Target:  5'- -gUggGUCUCaCCcuCGCCCCCgGAcgacaaaguGGCa -3'
miRNA:   3'- gaGuuUAGAG-GGu-GCGGGGGgCU---------CCG- -5'
29085 5' -58 NC_006146.1 + 167865 0.66 0.872551
Target:  5'- gCUCAGAUCg---GCGCgggggagCCCCGGGGCg -3'
miRNA:   3'- -GAGUUUAGagggUGCGg------GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 168797 0.66 0.872551
Target:  5'- gCUCAGAUCg---GCGCgggggagCCCCGGGGCg -3'
miRNA:   3'- -GAGUUUAGagggUGCGg------GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 52613 0.66 0.872551
Target:  5'- gUCAGcugggccaUCUCGUGCCCCCUGAGGa -3'
miRNA:   3'- gAGUUuag-----AGGGUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 12930 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 169729 0.66 0.872551
Target:  5'- gCUCAGAUCg---GCGCgggggagCCCCGGGGCg -3'
miRNA:   3'- -GAGUUUAGagggUGCGg------GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 25241 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 19085 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 28319 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 16007 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 130562 0.66 0.872551
Target:  5'- -gCAGAUC-CCCACGCCUaccaCCacGGCu -3'
miRNA:   3'- gaGUUUAGaGGGUGCGGGg---GGcuCCG- -5'
29085 5' -58 NC_006146.1 + 105699 0.66 0.872551
Target:  5'- -cCGGG-CUCCCAgGgCCCCCaGAGcGCc -3'
miRNA:   3'- gaGUUUaGAGGGUgCgGGGGG-CUC-CG- -5'
29085 5' -58 NC_006146.1 + 108484 0.66 0.872551
Target:  5'- uUCugcuUCUgCCugGCCUCCgaCGAGGUc -3'
miRNA:   3'- gAGuuu-AGAgGGugCGGGGG--GCUCCG- -5'
29085 5' -58 NC_006146.1 + 41025 0.66 0.872551
Target:  5'- gUCGAagaagggcAUCUCCCccccguccgcgGCGgCCCUgGGGGCc -3'
miRNA:   3'- gAGUU--------UAGAGGG-----------UGCgGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 60633 0.66 0.872551
Target:  5'- aUCAcGUCUgCgAUgGCuCCCCCGAGuGCa -3'
miRNA:   3'- gAGUuUAGAgGgUG-CG-GGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 117923 0.66 0.872551
Target:  5'- cCUCGAGaCgcccgCCC-CGCCCCgCGgaGGGCc -3'
miRNA:   3'- -GAGUUUaGa----GGGuGCGGGGgGC--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.