Results 1 - 20 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29085 | 5' | -58 | NC_006146.1 | + | 10120 | 0.66 | 0.879567 |
Target: 5'- -gUggGUCUCaCCcuCGCCCCCgGAcgacaaaguGGCa -3' miRNA: 3'- gaGuuUAGAG-GGu-GCGGGGGgCU---------CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 13064 | 0.66 | 0.879567 |
Target: 5'- gCUCGGug--CCCGuC-CCCUCCGGGGCc -3' miRNA: 3'- -GAGUUuagaGGGU-GcGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 164357 | 0.66 | 0.879567 |
Target: 5'- uCUCcuuUCUCCuCACGCCCgCCaucuGGUg -3' miRNA: 3'- -GAGuuuAGAGG-GUGCGGGgGGcu--CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 160988 | 0.66 | 0.879567 |
Target: 5'- gCUCGcgggCUCCguCGCCUCCUGccuGGCc -3' miRNA: 3'- -GAGUuua-GAGGguGCGGGGGGCu--CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 116677 | 0.66 | 0.879567 |
Target: 5'- -cCAGAUUUCCCACGUUCUCaauaaacuGGGCu -3' miRNA: 3'- gaGUUUAGAGGGUGCGGGGGgc------UCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 22163 | 0.66 | 0.872551 |
Target: 5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3' miRNA: 3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 169729 | 0.66 | 0.872551 |
Target: 5'- gCUCAGAUCg---GCGCgggggagCCCCGGGGCg -3' miRNA: 3'- -GAGUUUAGagggUGCGg------GGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 19085 | 0.66 | 0.872551 |
Target: 5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3' miRNA: 3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 25241 | 0.66 | 0.872551 |
Target: 5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3' miRNA: 3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 130562 | 0.66 | 0.872551 |
Target: 5'- -gCAGAUC-CCCACGCCUaccaCCacGGCu -3' miRNA: 3'- gaGUUUAGaGGGUGCGGGg---GGcuCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 12930 | 0.66 | 0.872551 |
Target: 5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3' miRNA: 3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 168797 | 0.66 | 0.872551 |
Target: 5'- gCUCAGAUCg---GCGCgggggagCCCCGGGGCg -3' miRNA: 3'- -GAGUUUAGagggUGCGg------GGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 28319 | 0.66 | 0.872551 |
Target: 5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3' miRNA: 3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 16007 | 0.66 | 0.872551 |
Target: 5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3' miRNA: 3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 167865 | 0.66 | 0.872551 |
Target: 5'- gCUCAGAUCg---GCGCgggggagCCCCGGGGCg -3' miRNA: 3'- -GAGUUUAGagggUGCGg------GGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 52613 | 0.66 | 0.872551 |
Target: 5'- gUCAGcugggccaUCUCGUGCCCCCUGAGGa -3' miRNA: 3'- gAGUUuag-----AGGGUGCGGGGGGCUCCg -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 105699 | 0.66 | 0.872551 |
Target: 5'- -cCGGG-CUCCCAgGgCCCCCaGAGcGCc -3' miRNA: 3'- gaGUUUaGAGGGUgCgGGGGG-CUC-CG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 108484 | 0.66 | 0.872551 |
Target: 5'- uUCugcuUCUgCCugGCCUCCgaCGAGGUc -3' miRNA: 3'- gAGuuu-AGAgGGugCGGGGG--GCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 41025 | 0.66 | 0.872551 |
Target: 5'- gUCGAagaagggcAUCUCCCccccguccgcgGCGgCCCUgGGGGCc -3' miRNA: 3'- gAGUU--------UAGAGGG-----------UGCgGGGGgCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 60633 | 0.66 | 0.872551 |
Target: 5'- aUCAcGUCUgCgAUgGCuCCCCCGAGuGCa -3' miRNA: 3'- gAGUuUAGAgGgUG-CG-GGGGGCUC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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