miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 121925 0.68 0.755702
Target:  5'- aUCAGcUCUCCCagACGCUcauCCCCGGGaaGCu -3'
miRNA:   3'- gAGUUuAGAGGG--UGCGG---GGGGCUC--CG- -5'
29085 5' -58 NC_006146.1 + 120621 0.76 0.347851
Target:  5'- -aCAGAUCUCCUGCGCCCCUu--GGCc -3'
miRNA:   3'- gaGUUUAGAGGGUGCGGGGGgcuCCG- -5'
29085 5' -58 NC_006146.1 + 119891 0.71 0.598809
Target:  5'- uUCAG--UUCCCAUucuCCCCCCGuGGCg -3'
miRNA:   3'- gAGUUuaGAGGGUGc--GGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 119239 0.67 0.800907
Target:  5'- uUCuGAGUCccggcaccggCCCugGCCCCCUGGGaGUc -3'
miRNA:   3'- gAG-UUUAGa---------GGGugCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 119082 0.67 0.818032
Target:  5'- --------cUCCACGCCgCCCCGGGGa -3'
miRNA:   3'- gaguuuagaGGGUGCGG-GGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 119082 0.7 0.668524
Target:  5'- ------cCUCCgGCGCUUCCCGAGGa -3'
miRNA:   3'- gaguuuaGAGGgUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 117923 0.66 0.872551
Target:  5'- cCUCGAGaCgcccgCCC-CGCCCCgCGgaGGGCc -3'
miRNA:   3'- -GAGUUUaGa----GGGuGCGGGGgGC--UCCG- -5'
29085 5' -58 NC_006146.1 + 117556 0.67 0.800907
Target:  5'- -cCAAGaC-CUCACGCCgCCCCGcGGCc -3'
miRNA:   3'- gaGUUUaGaGGGUGCGG-GGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 117441 0.74 0.412001
Target:  5'- -aCGAggCaCCCGCGCCUCCCG-GGCa -3'
miRNA:   3'- gaGUUuaGaGGGUGCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 117088 0.68 0.740639
Target:  5'- -cCGAcUCUUCCA-GCCCCCCGcuauggacgccgcgcGGGCc -3'
miRNA:   3'- gaGUUuAGAGGGUgCGGGGGGC---------------UCCG- -5'
29085 5' -58 NC_006146.1 + 116677 0.66 0.879567
Target:  5'- -cCAGAUUUCCCACGUUCUCaauaaacuGGGCu -3'
miRNA:   3'- gaGUUUAGAGGGUGCGGGGGgc------UCCG- -5'
29085 5' -58 NC_006146.1 + 116641 0.68 0.774154
Target:  5'- uCUCGGaggacGUUUCCCGCcugaccgggGCCgCCCaGAGGCu -3'
miRNA:   3'- -GAGUU-----UAGAGGGUG---------CGGgGGG-CUCCG- -5'
29085 5' -58 NC_006146.1 + 116415 0.67 0.800907
Target:  5'- --gGAGUCUCCUcccacgACGCCaUCCUGAGGa -3'
miRNA:   3'- gagUUUAGAGGG------UGCGG-GGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 116176 0.67 0.809546
Target:  5'- --uGAGUCUCCCcucggcCGCCCugaCCCG-GGCc -3'
miRNA:   3'- gagUUUAGAGGGu-----GCGGG---GGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 115724 0.73 0.492262
Target:  5'- cCUCAAaggugacagcGUCcaCCCugGCCUCCCGGcGGCu -3'
miRNA:   3'- -GAGUU----------UAGa-GGGugCGGGGGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 115139 0.68 0.746316
Target:  5'- cCUCGcugC-CCCugGCCCgCCGccGGGCg -3'
miRNA:   3'- -GAGUuuaGaGGGugCGGGgGGC--UCCG- -5'
29085 5' -58 NC_006146.1 + 113134 1.11 0.001647
Target:  5'- cCUCAAAUCUCCCACGCCCCCCGAGGCu -3'
miRNA:   3'- -GAGUUUAGAGGGUGCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 113084 0.71 0.592853
Target:  5'- aCUCAucAAUCaauuuggugaggagCUCGCGCUCCCCGGGGg -3'
miRNA:   3'- -GAGU--UUAGa-------------GGGUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 112698 0.72 0.559325
Target:  5'- uCUCGGGUCUggCCCGCaGCagggcgUCCCUGAGGCc -3'
miRNA:   3'- -GAGUUUAGA--GGGUG-CG------GGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 111861 0.66 0.865331
Target:  5'- -aCAAAUC-CCUuguaaagagacGgGUCCCUCGGGGCa -3'
miRNA:   3'- gaGUUUAGaGGG-----------UgCGGGGGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.