miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29098 3' -66.2 NC_006146.1 + 33283 0.66 0.51515
Target:  5'- aGGUgaaccgaaccaGCGgacccAGGGGCacCCGGCCCCCgGCc -3'
miRNA:   3'- cCCG-----------UGC-----UCCCCGc-GGCCGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 137599 0.66 0.51515
Target:  5'- cGGGC-CG-GGGGC-CgGGUgCCCCUGg -3'
miRNA:   3'- -CCCGuGCuCCCCGcGgCCG-GGGGAUg -5'
29098 3' -66.2 NC_006146.1 + 167802 0.66 0.51515
Target:  5'- uGGGCGUGGcGGGCGCgCGuggcccGCCCCCg-- -3'
miRNA:   3'- -CCCGUGCUcCCCGCG-GC------CGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 169666 0.66 0.51515
Target:  5'- uGGGCGUGGcGGGCGCgCGuggcccGCCCCCg-- -3'
miRNA:   3'- -CCCGUGCUcCCCGCG-GC------CGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 69634 0.66 0.51515
Target:  5'- gGGGUACuGGGGGCgGCUaaugGGCCCgCg-- -3'
miRNA:   3'- -CCCGUGcUCCCCG-CGG----CCGGGgGaug -5'
29098 3' -66.2 NC_006146.1 + 168734 0.66 0.51515
Target:  5'- uGGGCGUGGcGGGCGCgCGuggcccGCCCCCg-- -3'
miRNA:   3'- -CCCGUGCUcCCCGCG-GC------CGGGGGaug -5'
29098 3' -66.2 NC_006146.1 + 54599 0.66 0.514245
Target:  5'- gGGGagaggacCGCG-GGGGCGCCauccGGCCgCCUc- -3'
miRNA:   3'- -CCC-------GUGCuCCCCGCGG----CCGGgGGAug -5'
29098 3' -66.2 NC_006146.1 + 40485 0.66 0.506127
Target:  5'- gGGGCA-GAGGGGcCGCgaaaGGCagcggaCUCUGCc -3'
miRNA:   3'- -CCCGUgCUCCCC-GCGg---CCGg-----GGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 168207 0.66 0.506127
Target:  5'- gGGGCcgcGCGuGGGGaugGCCGGCgggaggggccggCgCCUGCa -3'
miRNA:   3'- -CCCG---UGCuCCCCg--CGGCCG------------GgGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 170105 0.66 0.506127
Target:  5'- cGGCGCcgcaGGGGGgGCCGGCggggcgUCCCg-- -3'
miRNA:   3'- cCCGUGc---UCCCCgCGGCCG------GGGGaug -5'
29098 3' -66.2 NC_006146.1 + 167275 0.66 0.506127
Target:  5'- gGGGCcgcGCGuGGGGaugGCCGGCgggaggggccggCgCCUGCa -3'
miRNA:   3'- -CCCG---UGCuCCCCg--CGGCCG------------GgGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 49535 0.66 0.506127
Target:  5'- gGGGCuccuCuGGGGGCggaggccacGCCGGCCaggCCCaGCa -3'
miRNA:   3'- -CCCGu---GcUCCCCG---------CGGCCGG---GGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 169139 0.66 0.506127
Target:  5'- gGGGCcgcGCGuGGGGaugGCCGGCgggaggggccggCgCCUGCa -3'
miRNA:   3'- -CCCG---UGCuCCCCg--CGGCCG------------GgGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 34162 0.66 0.506127
Target:  5'- cGGCGagggUGGGGGGUGC--GCCCCCaGCc -3'
miRNA:   3'- cCCGU----GCUCCCCGCGgcCGGGGGaUG- -5'
29098 3' -66.2 NC_006146.1 + 44798 0.66 0.505228
Target:  5'- gGGGCGCagcgucuaauacuGGGaccucuguaGGGgGCCGGCgCCCCUc- -3'
miRNA:   3'- -CCCGUG-------------CUC---------CCCgCGGCCG-GGGGAug -5'
29098 3' -66.2 NC_006146.1 + 43086 0.66 0.50433
Target:  5'- aGGCugGAGGcGGauuuucaggaCaGCCCCCUGCu -3'
miRNA:   3'- cCCGugCUCC-CCgcg-------GcCGGGGGAUG- -5'
29098 3' -66.2 NC_006146.1 + 135834 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 135741 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 135649 0.66 0.497172
Target:  5'- gGGGC-CGGGggccGGGUGCCccugGGUCCgCUGCc -3'
miRNA:   3'- -CCCGuGCUC----CCCGCGG----CCGGGgGAUG- -5'
29098 3' -66.2 NC_006146.1 + 43634 0.66 0.497172
Target:  5'- uGGGCG-GcGGGGCG-UGGCCgCCUGg -3'
miRNA:   3'- -CCCGUgCuCCCCGCgGCCGGgGGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.