miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 3' -51.3 NC_006146.1 + 38960 0.66 0.996759
Target:  5'- cCuuGGCAUCCGGGuGGGCccccagacucucgcaGAGgGGGCAGa -3'
miRNA:   3'- -GggCUGUAGGUUU-CCUG---------------CUU-CCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 71233 0.66 0.996544
Target:  5'- uCCUGGCuggucaacUCCuGGGGccugGCGggGGGCGGc -3'
miRNA:   3'- -GGGCUGu-------AGGuUUCC----UGCuuCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 145063 0.66 0.996544
Target:  5'- cCCUGGCGcuggauguaucUCCucauGAGGGugcCGAGGGAUGGg -3'
miRNA:   3'- -GGGCUGU-----------AGGu---UUCCU---GCUUCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 49530 0.66 0.996544
Target:  5'- aUCCGGgGgcUCCucuGGGGGCGGAGGcCAc -3'
miRNA:   3'- -GGGCUgU--AGGu--UUCCUGCUUCCuGUc -5'
29106 3' -51.3 NC_006146.1 + 156803 0.66 0.996375
Target:  5'- cCCCGACAUCCcgcccuGGGGACucuaGAccuccagacccgggAGGACc- -3'
miRNA:   3'- -GGGCUGUAGGu-----UUCCUG----CU--------------UCCUGuc -5'
29106 3' -51.3 NC_006146.1 + 149561 0.66 0.996199
Target:  5'- gCCGGCAgccccUCCGAgaaugacucuuggaaGGGGCGGcGGGAgAGg -3'
miRNA:   3'- gGGCUGU-----AGGUU---------------UCCUGCU-UCCUgUC- -5'
29106 3' -51.3 NC_006146.1 + 158429 0.66 0.995955
Target:  5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3'
miRNA:   3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5'
29106 3' -51.3 NC_006146.1 + 155350 0.66 0.995955
Target:  5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3'
miRNA:   3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5'
29106 3' -51.3 NC_006146.1 + 152272 0.66 0.995955
Target:  5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3'
miRNA:   3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5'
29106 3' -51.3 NC_006146.1 + 149194 0.66 0.995955
Target:  5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3'
miRNA:   3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5'
29106 3' -51.3 NC_006146.1 + 146116 0.66 0.995955
Target:  5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3'
miRNA:   3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5'
29106 3' -51.3 NC_006146.1 + 143038 0.66 0.995955
Target:  5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3'
miRNA:   3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5'
29106 3' -51.3 NC_006146.1 + 12726 0.66 0.995955
Target:  5'- uCCUGACggCCAAGGaGGCcAAGGugGu -3'
miRNA:   3'- -GGGCUGuaGGUUUC-CUGcUUCCugUc -5'
29106 3' -51.3 NC_006146.1 + 154661 0.66 0.995286
Target:  5'- gCCGGCugcaCCGuGGuGGCGggGGGCGc -3'
miRNA:   3'- gGGCUGua--GGUuUC-CUGCuuCCUGUc -5'
29106 3' -51.3 NC_006146.1 + 154550 0.66 0.995286
Target:  5'- uCCUG-CGUgCc--GGACGAGGGACAu -3'
miRNA:   3'- -GGGCuGUAgGuuuCCUGCUUCCUGUc -5'
29106 3' -51.3 NC_006146.1 + 139705 0.66 0.995286
Target:  5'- --aGGCAUCCAu-GGuguCGAGGGugGGc -3'
miRNA:   3'- gggCUGUAGGUuuCCu--GCUUCCugUC- -5'
29106 3' -51.3 NC_006146.1 + 57913 0.66 0.995286
Target:  5'- uCCagGACAUgCAGAGGGCGcuGGcCGGc -3'
miRNA:   3'- -GGg-CUGUAgGUUUCCUGCuuCCuGUC- -5'
29106 3' -51.3 NC_006146.1 + 112561 0.66 0.995286
Target:  5'- aCCCGGgGUCguGAGGAUGcagcuGGcCAGg -3'
miRNA:   3'- -GGGCUgUAGguUUCCUGCuu---CCuGUC- -5'
29106 3' -51.3 NC_006146.1 + 41020 0.66 0.995142
Target:  5'- gCCgGGCGUCagagccgugggaGGAGGGCcuAGGACAGc -3'
miRNA:   3'- -GGgCUGUAGg-----------UUUCCUGcuUCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 128850 0.66 0.995069
Target:  5'- gCCCGGCcaggcacaggaagggCCAcgaagaGGGGGCGGAGG-CGGg -3'
miRNA:   3'- -GGGCUGua-------------GGU------UUCCUGCUUCCuGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.