miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29122 3' -47.2 NC_006146.1 + 109569 0.66 0.999875
Target:  5'- uUGAGAUgAGUCUgGGCauggucguagcacuuGGACAGGACGg -3'
miRNA:   3'- -AUUUUGgUCAGGgUCG---------------UCUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 166152 0.66 0.999875
Target:  5'- -uGGACCAGgugCUCAGUAGcagacucagggacugGCGGAACAc -3'
miRNA:   3'- auUUUGGUCa--GGGUCGUC---------------UGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 94987 0.66 0.99986
Target:  5'- aAGAACCAGUagcagaagaCCaCGGCGGuCAGGAUg -3'
miRNA:   3'- aUUUUGGUCA---------GG-GUCGUCuGUUUUGu -5'
29122 3' -47.2 NC_006146.1 + 4629 0.66 0.99986
Target:  5'- -uGAugCAGaCCCuGCGGGCccAGAACAu -3'
miRNA:   3'- auUUugGUCaGGGuCGUCUG--UUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 53326 0.66 0.99986
Target:  5'- -cGAGCCcgAGgaggCCCGGCGGccGCGGGGCGg -3'
miRNA:   3'- auUUUGG--UCa---GGGUCGUC--UGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 56200 0.66 0.99986
Target:  5'- cAGGGCCcgGGUCUC-GCGGACGAGccGCGa -3'
miRNA:   3'- aUUUUGG--UCAGGGuCGUCUGUUU--UGU- -5'
29122 3' -47.2 NC_006146.1 + 74752 0.66 0.99986
Target:  5'- -uGAGCCAGcCuCCGGgGGGcCAAGACGc -3'
miRNA:   3'- auUUUGGUCaG-GGUCgUCU-GUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 40128 0.66 0.99986
Target:  5'- aGAGGCCcgcgauGUCCUuGCGGuACAGGGCGg -3'
miRNA:   3'- aUUUUGGu-----CAGGGuCGUC-UGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 29844 0.66 0.99986
Target:  5'- -uGAGCCAGggcaCCC-GCAcguuuGACAAGACGa -3'
miRNA:   3'- auUUUGGUCa---GGGuCGU-----CUGUUUUGU- -5'
29122 3' -47.2 NC_006146.1 + 129696 0.66 0.99986
Target:  5'- ----cCCAGUgCCcGCGGAUggGGCGc -3'
miRNA:   3'- auuuuGGUCAgGGuCGUCUGuuUUGU- -5'
29122 3' -47.2 NC_006146.1 + 44868 0.66 0.999819
Target:  5'- gGGAGcCCAGUCCCucccggcccAGCAG-CAGAAg- -3'
miRNA:   3'- aUUUU-GGUCAGGG---------UCGUCuGUUUUgu -5'
29122 3' -47.2 NC_006146.1 + 9786 0.66 0.999819
Target:  5'- cGAAACUuuguuUCCCAGCAGugAuaaaaauaGAACAu -3'
miRNA:   3'- aUUUUGGuc---AGGGUCGUCugU--------UUUGU- -5'
29122 3' -47.2 NC_006146.1 + 161786 0.66 0.999819
Target:  5'- gGAGACCGGcUCCaCGGUGGAUAGGc-- -3'
miRNA:   3'- aUUUUGGUC-AGG-GUCGUCUGUUUugu -5'
29122 3' -47.2 NC_006146.1 + 101077 0.66 0.999819
Target:  5'- ---cGCCGGUCUgGGUGGuCAAGGCu -3'
miRNA:   3'- auuuUGGUCAGGgUCGUCuGUUUUGu -5'
29122 3' -47.2 NC_006146.1 + 161853 0.66 0.999819
Target:  5'- gGAGACCGGcUCCaCGGUGGAUAGGc-- -3'
miRNA:   3'- aUUUUGGUC-AGG-GUCGUCUGUUUugu -5'
29122 3' -47.2 NC_006146.1 + 105203 0.66 0.999819
Target:  5'- gGGAGCCGGgggugCCCGGUgccugAGACGAGugcuCAa -3'
miRNA:   3'- aUUUUGGUCa----GGGUCG-----UCUGUUUu---GU- -5'
29122 3' -47.2 NC_006146.1 + 156352 0.66 0.999819
Target:  5'- cGAAAgCGG-CCCAGCAGcucCAGGGCc -3'
miRNA:   3'- aUUUUgGUCaGGGUCGUCu--GUUUUGu -5'
29122 3' -47.2 NC_006146.1 + 117016 0.66 0.999814
Target:  5'- aAAAGCCAGccgccccgcccgcUCCCAGUAGguguugaugcACAGGGCc -3'
miRNA:   3'- aUUUUGGUC-------------AGGGUCGUC----------UGUUUUGu -5'
29122 3' -47.2 NC_006146.1 + 137886 0.66 0.999814
Target:  5'- -cGGGCCggcagggGGUCCCcGUGGACAGGGCc -3'
miRNA:   3'- auUUUGG-------UCAGGGuCGUCUGUUUUGu -5'
29122 3' -47.2 NC_006146.1 + 26800 0.66 0.999701
Target:  5'- ---uACCAGUUCUAGCuuAGGCGuugGGGCAg -3'
miRNA:   3'- auuuUGGUCAGGGUCG--UCUGU---UUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.