miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 124518 0.72 0.25503
Target:  5'- cGgCCCUGGCgAGGGaCG-GGGGCCUGg -3'
miRNA:   3'- -CgGGGGCCGgUCCCaGUgCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 47508 0.72 0.260791
Target:  5'- gGCCgCCgCGGCCAGuuccagccaGGUUGCGGGGCCc- -3'
miRNA:   3'- -CGG-GG-GCCGGUC---------CCAGUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 52481 0.71 0.27263
Target:  5'- -aCCUCGGCCAGGGaCugGAcgacGGCCg- -3'
miRNA:   3'- cgGGGGCCGGUCCCaGugCU----CCGGac -5'
29126 3' -64.8 NC_006146.1 + 124137 0.71 0.278709
Target:  5'- aGCCaUCCGcCCGGGGUCGgGAGGCgaGg -3'
miRNA:   3'- -CGG-GGGCcGGUCCCAGUgCUCCGgaC- -5'
29126 3' -64.8 NC_006146.1 + 170186 0.71 0.278709
Target:  5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 169255 0.71 0.278709
Target:  5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 168323 0.71 0.278709
Target:  5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 167391 0.71 0.278709
Target:  5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 118053 0.71 0.278709
Target:  5'- aGCCCCCGGgCGGGGgcgGCGGcGGCUc- -3'
miRNA:   3'- -CGGGGGCCgGUCCCag-UGCU-CCGGac -5'
29126 3' -64.8 NC_006146.1 + 114066 0.71 0.284896
Target:  5'- cGCCCCCGccGCCAGaGGcCGCcucgGGGGCCa- -3'
miRNA:   3'- -CGGGGGC--CGGUC-CCaGUG----CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 101955 0.71 0.284896
Target:  5'- uGCCCCCuGGCUAGGGgcUC-CG-GGCuCUGg -3'
miRNA:   3'- -CGGGGG-CCGGUCCC--AGuGCuCCG-GAC- -5'
29126 3' -64.8 NC_006146.1 + 111256 0.71 0.291191
Target:  5'- -gCCCCGGaUAGGGUCAUuguccuGGGCCUGg -3'
miRNA:   3'- cgGGGGCCgGUCCCAGUGc-----UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 165710 0.71 0.297594
Target:  5'- uCCCCCaGGcCCAGGGaaaACGucucGGGCCUGg -3'
miRNA:   3'- cGGGGG-CC-GGUCCCag-UGC----UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 115333 0.71 0.297594
Target:  5'- gGCaCCCCGGaCucGGUCAuCGAGGCCUu -3'
miRNA:   3'- -CG-GGGGCCgGucCCAGU-GCUCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 125486 0.71 0.304106
Target:  5'- --aCCCGGCCGGGGccUCGCGcuGGCCc- -3'
miRNA:   3'- cggGGGCCGGUCCC--AGUGCu-CCGGac -5'
29126 3' -64.8 NC_006146.1 + 106179 0.71 0.304106
Target:  5'- aUCCCCGGCCugcugacacGGGUCcCGggccuccugccaGGGCCUGg -3'
miRNA:   3'- cGGGGGCCGGu--------CCCAGuGC------------UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 71447 0.7 0.31006
Target:  5'- uGCCCCCGGCUcuGGGGauguggaacuguuUC-CaGGGCCUGc -3'
miRNA:   3'- -CGGGGGCCGG--UCCC-------------AGuGcUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 60866 0.7 0.310727
Target:  5'- -aUCCCGG---GGGUCACGAGGCCa- -3'
miRNA:   3'- cgGGGGCCgguCCCAGUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 113505 0.7 0.310727
Target:  5'- -gCgUCGGCCGGgcacGGUCGCGGGGCCa- -3'
miRNA:   3'- cgGgGGCCGGUC----CCAGUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 142683 0.7 0.310727
Target:  5'- uGCCCuCCGGCU-GGGUCG-GAcGGUCUGg -3'
miRNA:   3'- -CGGG-GGCCGGuCCCAGUgCU-CCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.