miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29128 3' -55.5 NC_006146.1 + 110821 0.66 0.939861
Target:  5'- cGGCgauugcccgUAGCUCCacgGGAcGAGGCGGcGCc -3'
miRNA:   3'- -CCGa--------GUCGAGGca-CCU-CUUCGUCuCG- -5'
29128 3' -55.5 NC_006146.1 + 168796 0.66 0.939861
Target:  5'- cGCUCAGaUCgGcgcGGGGGAGCcccGGGGCg -3'
miRNA:   3'- cCGAGUCgAGgCa--CCUCUUCG---UCUCG- -5'
29128 3' -55.5 NC_006146.1 + 169728 0.66 0.939861
Target:  5'- cGCUCAGaUCgGcgcGGGGGAGCcccGGGGCg -3'
miRNA:   3'- cCGAGUCgAGgCa--CCUCUUCG---UCUCG- -5'
29128 3' -55.5 NC_006146.1 + 167864 0.66 0.939861
Target:  5'- cGCUCAGaUCgGcgcGGGGGAGCcccGGGGCg -3'
miRNA:   3'- cCGAGUCgAGgCa--CCUCUUCG---UCUCG- -5'
29128 3' -55.5 NC_006146.1 + 66244 0.66 0.935047
Target:  5'- cGGCgCAGgcauuCUCCacgGUGG-GggGCAGGGUc -3'
miRNA:   3'- -CCGaGUC-----GAGG---CACCuCuuCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 95209 0.66 0.935047
Target:  5'- cGCUgCAGCUCCuccagGGAGgcGUccguuGAGCg -3'
miRNA:   3'- cCGA-GUCGAGGca---CCUCuuCGu----CUCG- -5'
29128 3' -55.5 NC_006146.1 + 138385 0.66 0.935047
Target:  5'- uGGCggGGCUCUcagugagauGUGGAGGAG--GAGCu -3'
miRNA:   3'- -CCGagUCGAGG---------CACCUCUUCguCUCG- -5'
29128 3' -55.5 NC_006146.1 + 156509 0.66 0.929997
Target:  5'- cGGCguacgCGGC-CCG-GaGGGGAGCGGgaGGCg -3'
miRNA:   3'- -CCGa----GUCGaGGCaC-CUCUUCGUC--UCG- -5'
29128 3' -55.5 NC_006146.1 + 169169 0.66 0.929997
Target:  5'- gGGC-CGGCgCCugcagGGGGGgccGGCGGGGCg -3'
miRNA:   3'- -CCGaGUCGaGGca---CCUCU---UCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 168237 0.66 0.929997
Target:  5'- gGGC-CGGCgCCugcagGGGGGgccGGCGGGGCg -3'
miRNA:   3'- -CCGaGUCGaGGca---CCUCU---UCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 41023 0.66 0.929997
Target:  5'- gGGCgUCAGagCCGUGG-GAGG-AGGGCc -3'
miRNA:   3'- -CCG-AGUCgaGGCACCuCUUCgUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 167305 0.66 0.929997
Target:  5'- gGGC-CGGCgCCugcagGGGGGgccGGCGGGGCg -3'
miRNA:   3'- -CCGaGUCGaGGca---CCUCU---UCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 114258 0.66 0.929997
Target:  5'- gGGC-CAGCUCguaGUGGugccccagauaGGAAaCAGAGCc -3'
miRNA:   3'- -CCGaGUCGAGg--CACC-----------UCUUcGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 53370 0.66 0.929997
Target:  5'- cGGCccaGGCcCCGagGGAGAGGCGuGAGa -3'
miRNA:   3'- -CCGag-UCGaGGCa-CCUCUUCGU-CUCg -5'
29128 3' -55.5 NC_006146.1 + 135122 0.66 0.924708
Target:  5'- gGGUUU-GCUCCGgcggGGGGuGGCcGGGCc -3'
miRNA:   3'- -CCGAGuCGAGGCa---CCUCuUCGuCUCG- -5'
29128 3' -55.5 NC_006146.1 + 168421 0.66 0.924708
Target:  5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3'
miRNA:   3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 49252 0.66 0.924708
Target:  5'- aGGCUgGauGCUCUGaggcGGAGAAG-GGGGCg -3'
miRNA:   3'- -CCGAgU--CGAGGCa---CCUCUUCgUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 167489 0.66 0.924708
Target:  5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3'
miRNA:   3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 169353 0.66 0.924708
Target:  5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3'
miRNA:   3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 170284 0.66 0.924708
Target:  5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3'
miRNA:   3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.