Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 110821 | 0.66 | 0.939861 |
Target: 5'- cGGCgauugcccgUAGCUCCacgGGAcGAGGCGGcGCc -3' miRNA: 3'- -CCGa--------GUCGAGGca-CCU-CUUCGUCuCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 167864 | 0.66 | 0.939861 |
Target: 5'- cGCUCAGaUCgGcgcGGGGGAGCcccGGGGCg -3' miRNA: 3'- cCGAGUCgAGgCa--CCUCUUCG---UCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 168796 | 0.66 | 0.939861 |
Target: 5'- cGCUCAGaUCgGcgcGGGGGAGCcccGGGGCg -3' miRNA: 3'- cCGAGUCgAGgCa--CCUCUUCG---UCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 169728 | 0.66 | 0.939861 |
Target: 5'- cGCUCAGaUCgGcgcGGGGGAGCcccGGGGCg -3' miRNA: 3'- cCGAGUCgAGgCa--CCUCUUCG---UCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 138385 | 0.66 | 0.935047 |
Target: 5'- uGGCggGGCUCUcagugagauGUGGAGGAG--GAGCu -3' miRNA: 3'- -CCGagUCGAGG---------CACCUCUUCguCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 95209 | 0.66 | 0.935047 |
Target: 5'- cGCUgCAGCUCCuccagGGAGgcGUccguuGAGCg -3' miRNA: 3'- cCGA-GUCGAGGca---CCUCuuCGu----CUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 66244 | 0.66 | 0.935047 |
Target: 5'- cGGCgCAGgcauuCUCCacgGUGG-GggGCAGGGUc -3' miRNA: 3'- -CCGaGUC-----GAGG---CACCuCuuCGUCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 53370 | 0.66 | 0.929997 |
Target: 5'- cGGCccaGGCcCCGagGGAGAGGCGuGAGa -3' miRNA: 3'- -CCGag-UCGaGGCa-CCUCUUCGU-CUCg -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 156509 | 0.66 | 0.929997 |
Target: 5'- cGGCguacgCGGC-CCG-GaGGGGAGCGGgaGGCg -3' miRNA: 3'- -CCGa----GUCGaGGCaC-CUCUUCGUC--UCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 168237 | 0.66 | 0.929997 |
Target: 5'- gGGC-CGGCgCCugcagGGGGGgccGGCGGGGCg -3' miRNA: 3'- -CCGaGUCGaGGca---CCUCU---UCGUCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 41023 | 0.66 | 0.929997 |
Target: 5'- gGGCgUCAGagCCGUGG-GAGG-AGGGCc -3' miRNA: 3'- -CCG-AGUCgaGGCACCuCUUCgUCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 169169 | 0.66 | 0.929997 |
Target: 5'- gGGC-CGGCgCCugcagGGGGGgccGGCGGGGCg -3' miRNA: 3'- -CCGaGUCGaGGca---CCUCU---UCGUCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 167305 | 0.66 | 0.929997 |
Target: 5'- gGGC-CGGCgCCugcagGGGGGgccGGCGGGGCg -3' miRNA: 3'- -CCGaGUCGaGGca---CCUCU---UCGUCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 114258 | 0.66 | 0.929997 |
Target: 5'- gGGC-CAGCUCguaGUGGugccccagauaGGAAaCAGAGCc -3' miRNA: 3'- -CCGaGUCGAGg--CACC-----------UCUUcGUCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 167489 | 0.66 | 0.924708 |
Target: 5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3' miRNA: 3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 135122 | 0.66 | 0.924708 |
Target: 5'- gGGUUU-GCUCCGgcggGGGGuGGCcGGGCc -3' miRNA: 3'- -CCGAGuCGAGGCa---CCUCuUCGuCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 168421 | 0.66 | 0.924708 |
Target: 5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3' miRNA: 3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 170284 | 0.66 | 0.924708 |
Target: 5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3' miRNA: 3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 169353 | 0.66 | 0.924708 |
Target: 5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3' miRNA: 3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5' |
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29128 | 3' | -55.5 | NC_006146.1 | + | 49252 | 0.66 | 0.924708 |
Target: 5'- aGGCUgGauGCUCUGaggcGGAGAAG-GGGGCg -3' miRNA: 3'- -CCGAgU--CGAGGCa---CCUCUUCgUCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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