miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 84960 0.73 0.606152
Target:  5'- uGGGGGgGGCAAAgUCC-CGcaggccaUCCAGGCc -3'
miRNA:   3'- -CUCCUgCCGUUUgAGGuGC-------AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 132622 0.73 0.607167
Target:  5'- aAGGGcCGGCAGuguggcccGCUCCAgaUGuUCCAGGCa -3'
miRNA:   3'- cUCCU-GCCGUU--------UGAGGU--GC-AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 141744 0.73 0.617317
Target:  5'- aGGGACGGUgcaccgggaAGGCUCaGCGucUCCAGGCu -3'
miRNA:   3'- cUCCUGCCG---------UUUGAGgUGC--AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 118063 0.72 0.627479
Target:  5'- cGGGGGCGGCGGcggcucggccCUCCGCaUCCuGGGCa -3'
miRNA:   3'- -CUCCUGCCGUUu---------GAGGUGcAGG-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 38962 0.72 0.627479
Target:  5'- aGAGGugGGCAAGggaUCCAC-UCCcGGUg -3'
miRNA:   3'- -CUCCugCCGUUUg--AGGUGcAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 117195 0.72 0.627479
Target:  5'- aGAGGACGGgGAACgugcCCcCG-CUAGGCg -3'
miRNA:   3'- -CUCCUGCCgUUUGa---GGuGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 93933 0.72 0.627479
Target:  5'- aGGcGGCGGCgGGGCUCCGCucuccGUCcCAGGCg -3'
miRNA:   3'- cUC-CUGCCG-UUUGAGGUG-----CAG-GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 3265 0.72 0.637644
Target:  5'- uGGGGACGGCGcaggCCACGagCCGGGg -3'
miRNA:   3'- -CUCCUGCCGUuugaGGUGCa-GGUCCg -5'
29131 3' -55.7 NC_006146.1 + 9160 0.72 0.637644
Target:  5'- cGGGGACGGCGGGCUCCcacCGUgCCAc-- -3'
miRNA:   3'- -CUCCUGCCGUUUGAGGu--GCA-GGUccg -5'
29131 3' -55.7 NC_006146.1 + 114307 0.72 0.637644
Target:  5'- cGAGGagaccgGCGGCGGGCUCgGCG-CCcGGCc -3'
miRNA:   3'- -CUCC------UGCCGUUUGAGgUGCaGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 57822 0.72 0.647805
Target:  5'- cGAGGcCGGguG-CUCCAaccUCCAGGCa -3'
miRNA:   3'- -CUCCuGCCguUuGAGGUgc-AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 127624 0.72 0.657954
Target:  5'- -uGGGCGGCAccgccGGC-CCGCugccucuuGUCCAGGCc -3'
miRNA:   3'- cuCCUGCCGU-----UUGaGGUG--------CAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 155863 0.72 0.657954
Target:  5'- cAGGccCGGCGGGC-CCugG-CCAGGCg -3'
miRNA:   3'- cUCCu-GCCGUUUGaGGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 50422 0.72 0.657954
Target:  5'- aGGGACGGCAggcaggccgcaAGCUUCGCGgCCAGauGCa -3'
miRNA:   3'- cUCCUGCCGU-----------UUGAGGUGCaGGUC--CG- -5'
29131 3' -55.7 NC_006146.1 + 1292 0.71 0.678182
Target:  5'- gGAGGGCGGCGAcaAUcgCCGCGcCCccucAGGCc -3'
miRNA:   3'- -CUCCUGCCGUU--UGa-GGUGCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 361 0.71 0.678182
Target:  5'- gGAGGGCGGCGAcaAUcgCCGCGcCCccucAGGCc -3'
miRNA:   3'- -CUCCUGCCGUU--UGa-GGUGCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 105339 0.71 0.678182
Target:  5'- gGAGGGugaGGUAGACUCCACGgaCGGGg -3'
miRNA:   3'- -CUCCUg--CCGUUUGAGGUGCagGUCCg -5'
29131 3' -55.7 NC_006146.1 + 3156 0.71 0.678182
Target:  5'- gGAGGGCGGCGAcaAUcgCCGCGcCCccucAGGCc -3'
miRNA:   3'- -CUCCUGCCGUU--UGa-GGUGCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 2224 0.71 0.678182
Target:  5'- gGAGGGCGGCGAcaAUcgCCGCGcCCccucAGGCc -3'
miRNA:   3'- -CUCCUGCCGUU--UGa-GGUGCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 128822 0.71 0.68523
Target:  5'- aAGGACGGCGcGgUCCAggagcagguaagccCGgCCAGGCa -3'
miRNA:   3'- cUCCUGCCGUuUgAGGU--------------GCaGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.