miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 5' -56.4 NC_006146.1 + 51835 0.66 0.89679
Target:  5'- -aGCGccGGAGGUGGGCUgcgGUUGCaggCCAg -3'
miRNA:   3'- gaCGCa-UCUUCAUCCGGa--CGACG---GGU- -5'
29131 5' -56.4 NC_006146.1 + 139428 0.66 0.89679
Target:  5'- gCUGUuuaGUAGGAGaAGGCCcccacGgUGCCCGg -3'
miRNA:   3'- -GACG---CAUCUUCaUCCGGa----CgACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 46453 0.66 0.89679
Target:  5'- -gGCGgcGgcGUAGGCCggaUGCgUGCCg- -3'
miRNA:   3'- gaCGCauCuuCAUCCGG---ACG-ACGGgu -5'
29131 5' -56.4 NC_006146.1 + 63119 0.66 0.890118
Target:  5'- cCUGCGcAGGugccccUGGGaCCUGCUGgCCAu -3'
miRNA:   3'- -GACGCaUCUuc----AUCC-GGACGACgGGU- -5'
29131 5' -56.4 NC_006146.1 + 93925 0.66 0.890118
Target:  5'- -gGCGUAGAAGgcGGCg-GCgggGCuCCGc -3'
miRNA:   3'- gaCGCAUCUUCauCCGgaCGa--CG-GGU- -5'
29131 5' -56.4 NC_006146.1 + 120050 0.66 0.890118
Target:  5'- -cGCGgAGAcuGGU-GGCgCUGCUGCgCCGg -3'
miRNA:   3'- gaCGCaUCU--UCAuCCG-GACGACG-GGU- -5'
29131 5' -56.4 NC_006146.1 + 135691 0.66 0.888756
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGu -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 128053 0.66 0.883217
Target:  5'- cCUGCGc----GUGGGCCUgGCgGCCCu -3'
miRNA:   3'- -GACGCaucuuCAUCCGGA-CGaCGGGu -5'
29131 5' -56.4 NC_006146.1 + 48628 0.66 0.87609
Target:  5'- gUGcCGUGGggGcGGGCUccggGCgggUGCCCAg -3'
miRNA:   3'- gAC-GCAUCuuCaUCCGGa---CG---ACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 24210 0.66 0.87609
Target:  5'- cCUGCG-AGGuucuGUugGGGCCgggGCcGCCCAc -3'
miRNA:   3'- -GACGCaUCUu---CA--UCCGGa--CGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135289 0.66 0.87609
Target:  5'- ---aGUGGggGgcuaAGGCa-GCUGCCCAc -3'
miRNA:   3'- gacgCAUCuuCa---UCCGgaCGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 120525 0.66 0.87609
Target:  5'- -cGCGUGGAugcGgcGGCgggaCUGCUGgCCAa -3'
miRNA:   3'- gaCGCAUCUu--CauCCG----GACGACgGGU- -5'
29131 5' -56.4 NC_006146.1 + 135319 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135876 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 136434 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135783 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135598 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135505 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135412 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135133 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.