miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29136 3' -65.8 NC_006146.1 + 158410 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 155331 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 152253 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 149175 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 146097 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 143019 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 100693 0.66 0.50996
Target:  5'- cGCGGCCCucGGCAcccggcGCUgCGGGGgUgGGu -3'
miRNA:   3'- uCGCCGGG--UCGU------CGAgGUCCCgGgCC- -5'
29136 3' -65.8 NC_006146.1 + 13395 0.66 0.50996
Target:  5'- cGCGGCCaCGGaCuGCcucagCCAGGucugcaaggcccGCCCGGu -3'
miRNA:   3'- uCGCCGG-GUC-GuCGa----GGUCC------------CGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 78776 0.66 0.50996
Target:  5'- nGCccCCCAGCAGCagccCCAggccGGGCCCGc -3'
miRNA:   3'- uCGccGGGUCGUCGa---GGU----CCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 60898 0.66 0.50996
Target:  5'- uGgGGCCCAGUGGaUCCAGGaGCUguuucgcaccgCGGu -3'
miRNA:   3'- uCgCCGGGUCGUCgAGGUCC-CGG-----------GCC- -5'
29136 3' -65.8 NC_006146.1 + 49521 0.66 0.50996
Target:  5'- cGGCGGgugaUCCGGgGGCUCCucugGGGGCggaggccacgCCGGc -3'
miRNA:   3'- -UCGCC----GGGUCgUCGAGG----UCCCG----------GGCC- -5'
29136 3' -65.8 NC_006146.1 + 78626 0.66 0.50996
Target:  5'- nGCccCCCAGCAGCagccCCAggccGGGCCCGc -3'
miRNA:   3'- uCGccGGGUCGUCGa---GGU----CCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 156516 0.66 0.500897
Target:  5'- cGCGGCCCGGaggggAGCgggaggcgagaUCCcGGGaCCCGa -3'
miRNA:   3'- uCGCCGGGUCg----UCG-----------AGGuCCC-GGGCc -5'
29136 3' -65.8 NC_006146.1 + 42013 0.66 0.500897
Target:  5'- cGuuGCCgAGCuaCUCCcucuGGGCCCGGg -3'
miRNA:   3'- uCgcCGGgUCGucGAGGu---CCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 41054 0.66 0.500897
Target:  5'- cGGCGGCCCuGGgGGCcUCGGGGUggaGGg -3'
miRNA:   3'- -UCGCCGGG-UCgUCGaGGUCCCGgg-CC- -5'
29136 3' -65.8 NC_006146.1 + 141768 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 144846 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 147924 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 151002 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 154080 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.