miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 103759 0.66 0.567045
Target:  5'- cAGGa-GCgGCCAGCGGCuCCCGGu--- -3'
miRNA:   3'- -UCCggCGgCGGUCGUCG-GGGCUguag -5'
29137 3' -64.1 NC_006146.1 + 43245 0.66 0.567045
Target:  5'- gGGGUgccuCGgCGCCAGCgcGGCCUgGACAa- -3'
miRNA:   3'- -UCCG----GCgGCGGUCG--UCGGGgCUGUag -5'
29137 3' -64.1 NC_006146.1 + 52841 0.66 0.567045
Target:  5'- aGGGCCgaGCCGCC-GCcGCCCCcGCc-- -3'
miRNA:   3'- -UCCGG--CGGCGGuCGuCGGGGcUGuag -5'
29137 3' -64.1 NC_006146.1 + 52158 0.66 0.567045
Target:  5'- -aGCCGCUGCCGuuGGCCUCGuaaaaGUCg -3'
miRNA:   3'- ucCGGCGGCGGUcgUCGGGGCug---UAG- -5'
29137 3' -64.1 NC_006146.1 + 55344 0.66 0.567045
Target:  5'- aGGGCCGCgguCGCCucCAGCCCCcGCc-- -3'
miRNA:   3'- -UCCGGCG---GCGGucGUCGGGGcUGuag -5'
29137 3' -64.1 NC_006146.1 + 57368 0.66 0.567045
Target:  5'- gAGGCUGCggcgguggCGCCGGUgggcuGGCCCCG-CGa- -3'
miRNA:   3'- -UCCGGCG--------GCGGUCG-----UCGGGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 103122 0.66 0.567045
Target:  5'- uGGCCGCCGUCA-CGuCCCUGGCc-- -3'
miRNA:   3'- uCCGGCGGCGGUcGUcGGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 75808 0.66 0.567045
Target:  5'- cGGgCGCCGCCuucgaGGCCCUgcggGACAUg -3'
miRNA:   3'- uCCgGCGGCGGucg--UCGGGG----CUGUAg -5'
29137 3' -64.1 NC_006146.1 + 48037 0.66 0.566086
Target:  5'- cGGGCCggcucggGUCGuCCAGC-GCCCCGgGCAg- -3'
miRNA:   3'- -UCCGG-------CGGC-GGUCGuCGGGGC-UGUag -5'
29137 3' -64.1 NC_006146.1 + 104401 0.66 0.566086
Target:  5'- gAGGCCGugccaaaauCCGUCAGCAccagccuccccauGCCCC-ACAUg -3'
miRNA:   3'- -UCCGGC---------GGCGGUCGU-------------CGGGGcUGUAg -5'
29137 3' -64.1 NC_006146.1 + 98697 0.66 0.566086
Target:  5'- gGGGCCGCUGgucucccgcccauCCGGCcGCCgCGuccuCGUCg -3'
miRNA:   3'- -UCCGGCGGC-------------GGUCGuCGGgGCu---GUAG- -5'
29137 3' -64.1 NC_006146.1 + 168111 0.66 0.557474
Target:  5'- aAGGCCuGCuggCGCCuGGCGucuuCCCUGACAUCc -3'
miRNA:   3'- -UCCGG-CG---GCGG-UCGUc---GGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 76813 0.66 0.557474
Target:  5'- gAGGCCGCUGCUcucuGGuCGGCUCgG-UAUCg -3'
miRNA:   3'- -UCCGGCGGCGG----UC-GUCGGGgCuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 70694 0.66 0.557474
Target:  5'- cAGGCCacggGCCGCCuGguGUCuCUGGCGa- -3'
miRNA:   3'- -UCCGG----CGGCGGuCguCGG-GGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 130516 0.66 0.557474
Target:  5'- uAGGgUGCUGUCAGCAGCCacaauCCGgGCAa- -3'
miRNA:   3'- -UCCgGCGGCGGUCGUCGG-----GGC-UGUag -5'
29137 3' -64.1 NC_006146.1 + 71430 0.66 0.557474
Target:  5'- aAGGgCGCgGCCGGCauuuuGGCaCCUGGCGc- -3'
miRNA:   3'- -UCCgGCGgCGGUCG-----UCG-GGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 123307 0.66 0.557474
Target:  5'- uGGCgGCCGCCgAGUGGaUCCgGgACGUCu -3'
miRNA:   3'- uCCGgCGGCGG-UCGUC-GGGgC-UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 127408 0.66 0.557474
Target:  5'- uGGGCCccGCCGCCGGagccggugucaaCGGCCgCCGAg--- -3'
miRNA:   3'- -UCCGG--CGGCGGUC------------GUCGG-GGCUguag -5'
29137 3' -64.1 NC_006146.1 + 53168 0.66 0.547949
Target:  5'- cGGCgGUgGCCGGaaggcucggccuCGGCCCCGGCcUUg -3'
miRNA:   3'- uCCGgCGgCGGUC------------GUCGGGGCUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 155838 0.66 0.547949
Target:  5'- cGGaGCCcCCGCCAgugccuccucGCAGgCCCGGCGg- -3'
miRNA:   3'- -UC-CGGcGGCGGU----------CGUCgGGGCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.