miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 66529 0.71 0.269769
Target:  5'- -cGCCGCUGUCaaacagGGgGGCCCCGAUGUCu -3'
miRNA:   3'- ucCGGCGGCGG------UCgUCGGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 33235 0.71 0.269769
Target:  5'- cGGGUgGCCGCCGGCGGgUCCGcCGg- -3'
miRNA:   3'- -UCCGgCGGCGGUCGUCgGGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 92162 0.71 0.275901
Target:  5'- gGGGCUGCUGCUggggGGCGGgCCCGGCc-- -3'
miRNA:   3'- -UCCGGCGGCGG----UCGUCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 1636 0.71 0.275901
Target:  5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3'
miRNA:   3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5'
29137 3' -64.1 NC_006146.1 + 705 0.71 0.275901
Target:  5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3'
miRNA:   3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5'
29137 3' -64.1 NC_006146.1 + 92282 0.71 0.275901
Target:  5'- gGGGCUGCUGCUggggGGCGGgCCCGGCc-- -3'
miRNA:   3'- -UCCGGCGGCGG----UCGUCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 92312 0.71 0.275901
Target:  5'- gGGGCUGCUGCUggggGGCGGgCCCGGCc-- -3'
miRNA:   3'- -UCCGGCGGCGG----UCGUCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 92192 0.71 0.275901
Target:  5'- gGGGCUGCUGCUggggGGCGGgCCCGGCc-- -3'
miRNA:   3'- -UCCGGCGGCGG----UCGUCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 92222 0.71 0.275901
Target:  5'- gGGGCUGCUGCUggggGGCGGgCCCGGCc-- -3'
miRNA:   3'- -UCCGGCGGCGG----UCGUCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 92132 0.71 0.275901
Target:  5'- gGGGCUGCUGCUggggGGCGGgCCCGGCc-- -3'
miRNA:   3'- -UCCGGCGGCGG----UCGUCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 92102 0.71 0.275901
Target:  5'- gGGGCUGCUGCUggggGGCGGgCCCGGCc-- -3'
miRNA:   3'- -UCCGGCGGCGG----UCGUCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 92013 0.71 0.275901
Target:  5'- gGGGCUGCUGCUggggGGCGGgCCCGGCc-- -3'
miRNA:   3'- -UCCGGCGGCGG----UCGUCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 92043 0.71 0.275901
Target:  5'- gGGGCUGCUGCUggggGGCGGgCCCGGCc-- -3'
miRNA:   3'- -UCCGGCGGCGG----UCGUCgGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 2568 0.71 0.275901
Target:  5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3'
miRNA:   3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5'
29137 3' -64.1 NC_006146.1 + 3500 0.71 0.275901
Target:  5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3'
miRNA:   3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5'
29137 3' -64.1 NC_006146.1 + 152037 0.71 0.281515
Target:  5'- gAGGCCcCCGCacguccaccacccCGGCAGCgCCCGGgGUCu -3'
miRNA:   3'- -UCCGGcGGCG-------------GUCGUCG-GGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 114224 0.71 0.282144
Target:  5'- aGGGCCaGCC-CCAGgGGgCCCGGCAccUCa -3'
miRNA:   3'- -UCCGG-CGGcGGUCgUCgGGGCUGU--AG- -5'
29137 3' -64.1 NC_006146.1 + 43336 0.71 0.282144
Target:  5'- cGGCCGCCcaggGCCAgcaggcGCAGCCCgUGGCAg- -3'
miRNA:   3'- uCCGGCGG----CGGU------CGUCGGG-GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 149551 0.71 0.282144
Target:  5'- cAGGaaGcCCGCCGGCAGCCCCucCGa- -3'
miRNA:   3'- -UCCggC-GGCGGUCGUCGGGGcuGUag -5'
29137 3' -64.1 NC_006146.1 + 42633 0.71 0.282144
Target:  5'- cGGCCGCCGCCGugGGCCUC-ACGUa -3'
miRNA:   3'- uCCGGCGGCGGUcgUCGGGGcUGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.