miRNA display CGI


Results 41 - 60 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 9133 0.67 0.510416
Target:  5'- cAGGCCcCCGCCcaGGC-GCCCCcucgGACcUCa -3'
miRNA:   3'- -UCCGGcGGCGG--UCGuCGGGG----CUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 15317 0.67 0.510416
Target:  5'- gAGGCCaGCC-CCGGUGuGCCCCuGGCGg- -3'
miRNA:   3'- -UCCGG-CGGcGGUCGU-CGGGG-CUGUag -5'
29137 3' -64.1 NC_006146.1 + 117152 0.67 0.510416
Target:  5'- cGcCCGCCGCCcGUcuucGCCCCGGCGc- -3'
miRNA:   3'- uCcGGCGGCGGuCGu---CGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 123636 0.67 0.510416
Target:  5'- -aGCCGUCGCCGGUcucGCUCaCGGCGUg -3'
miRNA:   3'- ucCGGCGGCGGUCGu--CGGG-GCUGUAg -5'
29137 3' -64.1 NC_006146.1 + 109316 0.67 0.509491
Target:  5'- cGGCCGCUgcaGCCGGCucuuccucagcguGGCCCuCGGgGUg -3'
miRNA:   3'- uCCGGCGG---CGGUCG-------------UCGGG-GCUgUAg -5'
29137 3' -64.1 NC_006146.1 + 114117 0.67 0.502115
Target:  5'- cGGCCGCCgcgcucaccgaggagGCCugcGCgugcuccgcgaucaGGCCCCgGACGUCc -3'
miRNA:   3'- uCCGGCGG---------------CGGu--CG--------------UCGGGG-CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 34141 0.67 0.501197
Target:  5'- cGGCCggGCCuCCcGgAGCCCCGGCGa- -3'
miRNA:   3'- uCCGG--CGGcGGuCgUCGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 3552 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 2620 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 14120 0.67 0.501197
Target:  5'- gGGGCUGCUGgCGGCGGCCU--ACAg- -3'
miRNA:   3'- -UCCGGCGGCgGUCGUCGGGgcUGUag -5'
29137 3' -64.1 NC_006146.1 + 47507 0.67 0.501197
Target:  5'- cGGCCGCCGCggccaguucCAGCcagguugcggGGcCCCCGGCc-- -3'
miRNA:   3'- uCCGGCGGCG---------GUCG----------UC-GGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 40382 0.67 0.501197
Target:  5'- uGGUCGCCGCCcggcgcguAGUAGCCuCCcGCGg- -3'
miRNA:   3'- uCCGGCGGCGG--------UCGUCGG-GGcUGUag -5'
29137 3' -64.1 NC_006146.1 + 72929 0.67 0.501197
Target:  5'- uGGCCaGCCGCCccauCuuCCCCGAgGUCa -3'
miRNA:   3'- uCCGG-CGGCGGuc--GucGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 757 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 1688 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 149630 0.67 0.500279
Target:  5'- cGGgCGuCCGCCAGCAccaggucgagcacGCgCCGGCAg- -3'
miRNA:   3'- uCCgGC-GGCGGUCGU-------------CGgGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 165828 0.67 0.492051
Target:  5'- uGGCCGCguggaCGCCuccaacGGcCAGCCCCG-CAUa -3'
miRNA:   3'- uCCGGCG-----GCGG------UC-GUCGGGGCuGUAg -5'
29137 3' -64.1 NC_006146.1 + 127984 0.67 0.492051
Target:  5'- uGGcGCCGCUGCugacagccgggaCAGaCGGCCCUaGCGUCg -3'
miRNA:   3'- -UC-CGGCGGCG------------GUC-GUCGGGGcUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 126204 0.67 0.492051
Target:  5'- gGGGCCaCgGCCAccGCcGCCacaCCGGCAUCa -3'
miRNA:   3'- -UCCGGcGgCGGU--CGuCGG---GGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 137558 0.67 0.492051
Target:  5'- cGGCgGCCacCCGGCuGCCCCGgaGCAc- -3'
miRNA:   3'- uCCGgCGGc-GGUCGuCGGGGC--UGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.