miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 170148 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 170100 0.68 0.413625
Target:  5'- gGGGCCGgCGCCgcagggggggccGGCGgggcGUCCCGuCGUCa -3'
miRNA:   3'- -UCCGGCgGCGG------------UCGU----CGGGGCuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 169217 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 169168 0.68 0.421122
Target:  5'- gGGGCCGgCGCCugcagggggggccGGCGgggcGUCCCGuCGUCa -3'
miRNA:   3'- -UCCGGCgGCGG-------------UCGU----CGGGGCuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 168285 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 168236 0.68 0.421122
Target:  5'- gGGGCCGgCGCCugcagggggggccGGCGgggcGUCCCGuCGUCa -3'
miRNA:   3'- -UCCGGCgGCGG-------------UCGU----CGGGGCuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 168111 0.66 0.557474
Target:  5'- aAGGCCuGCuggCGCCuGGCGucuuCCCUGACAUCc -3'
miRNA:   3'- -UCCGG-CG---GCGG-UCGUc---GGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 167353 0.71 0.301542
Target:  5'- cGGCUGCaCGCgCGGCGGCgCCGGCc-- -3'
miRNA:   3'- uCCGGCG-GCG-GUCGUCGgGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 167304 0.68 0.421122
Target:  5'- gGGGCCGgCGCCugcagggggggccGGCGgggcGUCCCGuCGUCa -3'
miRNA:   3'- -UCCGGCgGCGG-------------UCGU----CGGGGCuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 166796 0.67 0.482984
Target:  5'- uGGCCGCCGUCAucaAGUCCaUGACcgCg -3'
miRNA:   3'- uCCGGCGGCGGUcg-UCGGG-GCUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 165828 0.67 0.492051
Target:  5'- uGGCCGCguggaCGCCuccaacGGcCAGCCCCG-CAUa -3'
miRNA:   3'- uCCGGCG-----GCGG------UC-GUCGGGGCuGUAg -5'
29137 3' -64.1 NC_006146.1 + 165309 0.68 0.405392
Target:  5'- uGGCgGCCGUCgggugAGCagAGCCCCGAgAUg -3'
miRNA:   3'- uCCGgCGGCGG-----UCG--UCGGGGCUgUAg -5'
29137 3' -64.1 NC_006146.1 + 158984 0.67 0.473998
Target:  5'- gAGGCCGCaaaGaCCAGguGCUCC-ACcgCg -3'
miRNA:   3'- -UCCGGCGg--C-GGUCguCGGGGcUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 157844 0.69 0.389238
Target:  5'- aGGGCgGCCGCCuuGgGGCCCgGA-GUCu -3'
miRNA:   3'- -UCCGgCGGCGGu-CgUCGGGgCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 157798 0.68 0.413625
Target:  5'- gAGGCCGgaccCCGCCuGGCGaCCCUGGgGUCu -3'
miRNA:   3'- -UCCGGC----GGCGG-UCGUcGGGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 157681 0.69 0.358225
Target:  5'- aGGGCagaGCCaGCCAGCGGCugaaCCCGAgGa- -3'
miRNA:   3'- -UCCGg--CGG-CGGUCGUCG----GGGCUgUag -5'
29137 3' -64.1 NC_006146.1 + 157255 0.67 0.492051
Target:  5'- uGGCCGCUGCCuGUguccGGCgCuuGAuCGUCa -3'
miRNA:   3'- uCCGGCGGCGGuCG----UCG-GggCU-GUAG- -5'
29137 3' -64.1 NC_006146.1 + 157075 0.67 0.492051
Target:  5'- -cGCUGuCCGCCAGCaccgagaagcGGCCCaauaaguacuCGGCGUCg -3'
miRNA:   3'- ucCGGC-GGCGGUCG----------UCGGG----------GCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 156786 1.07 0.000733
Target:  5'- uAGGCCGCCGCCAGCAGCCCCGACAUCc -3'
miRNA:   3'- -UCCGGCGGCGGUCGUCGGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 156050 0.67 0.465096
Target:  5'- uGGCUGCCcccucgGCCucccGCGGCCCCGGg--- -3'
miRNA:   3'- uCCGGCGG------CGGu---CGUCGGGGCUguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.