miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29139 5' -67.3 NC_006146.1 + 168112 0.65 0.43386
Target:  5'- aGGCCUgcuGGCGCCUGGCGUCUucccugacauccggGCuugGGCc -3'
miRNA:   3'- gUCGGG---CCGCGGGCCGCGGA--------------CG---UCGu -5'
29139 5' -67.3 NC_006146.1 + 115388 0.66 0.428027
Target:  5'- aGGCCCuGGcCGCUCGcGUGCaggagGCAGCu -3'
miRNA:   3'- gUCGGG-CC-GCGGGC-CGCGga---CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 147770 0.66 0.428027
Target:  5'- aAGCCCaGGCuCCCGGCcUCUcccaggaagaGCAGCGg -3'
miRNA:   3'- gUCGGG-CCGcGGGCCGcGGA----------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 65122 0.66 0.428027
Target:  5'- gAGCCCugGGUGCCCuuGGUGCUcuUGgAGCu -3'
miRNA:   3'- gUCGGG--CCGCGGG--CCGCGG--ACgUCGu -5'
29139 5' -67.3 NC_006146.1 + 62688 0.66 0.428027
Target:  5'- -cGCCaaGCGCgCGGUGCgUGCGGUc -3'
miRNA:   3'- guCGGgcCGCGgGCCGCGgACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 28219 0.66 0.428027
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUG-GGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 150898 0.66 0.428027
Target:  5'- uGGCCCGGaggaaGCCCuucccGGCGUCgUGgGGCc -3'
miRNA:   3'- gUCGGGCCg----CGGG-----CCGCGG-ACgUCGu -5'
29139 5' -67.3 NC_006146.1 + 25141 0.66 0.428027
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUG-GGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 22063 0.66 0.428027
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUG-GGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 129043 0.66 0.428027
Target:  5'- gCAGCCCGaGCuggGCCCaGaCGCCggcGCAGaCAg -3'
miRNA:   3'- -GUCGGGC-CG---CGGGcC-GCGGa--CGUC-GU- -5'
29139 5' -67.3 NC_006146.1 + 15908 0.66 0.428027
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUG-GGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 18985 0.66 0.428027
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUG-GGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 85927 0.66 0.428027
Target:  5'- --cCCUGGgGCCUGGaugGCCUGCGGg- -3'
miRNA:   3'- gucGGGCCgCGGGCCg--CGGACGUCgu -5'
29139 5' -67.3 NC_006146.1 + 35762 0.66 0.428027
Target:  5'- gCGGaCCCGGCagcgGCCCGGCcaccccccGCC-GgAGCAa -3'
miRNA:   3'- -GUC-GGGCCG----CGGGCCG--------CGGaCgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 40071 0.66 0.428027
Target:  5'- aCAGCgucucCCGGCGga-GG-GCCUGCAGCGc -3'
miRNA:   3'- -GUCG-----GGCCGCgggCCgCGGACGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 92972 0.66 0.419776
Target:  5'- aCAGCgacccCCGGCaccugcgaggccGCCCGccccuGCGCCUGUuaAGCAg -3'
miRNA:   3'- -GUCG-----GGCCG------------CGGGC-----CGCGGACG--UCGU- -5'
29139 5' -67.3 NC_006146.1 + 46973 0.66 0.411621
Target:  5'- cCGGCCCGGCcgccGCCaggaauuGCGCCcgucggaccgGCAGCGg -3'
miRNA:   3'- -GUCGGGCCG----CGGgc-----CGCGGa---------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 117159 0.66 0.411621
Target:  5'- -cGCCCGucuuCGcCCCGGCGCagccGCGGCu -3'
miRNA:   3'- guCGGGCc---GC-GGGCCGCGga--CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 122629 0.66 0.411621
Target:  5'- gAGgCCGGgGCCCucuuucGCGCCaggacgGCGGCGg -3'
miRNA:   3'- gUCgGGCCgCGGGc-----CGCGGa-----CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 156852 0.66 0.411621
Target:  5'- gCAGCcagCCGGCGCuuG-CGCCUGCccccGCc -3'
miRNA:   3'- -GUCG---GGCCGCGggCcGCGGACGu---CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.