miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29140 5' -58.9 NC_006146.1 + 108528 0.66 0.86982
Target:  5'- cCCaGGccGAGgCCCCGUCCuCGuACAGcGGg -3'
miRNA:   3'- -GG-CC--CUCgGGGGCAGGuGUuUGUC-CC- -5'
29140 5' -58.9 NC_006146.1 + 14181 0.66 0.86982
Target:  5'- gCCaGGcuGGaCCCCCGgagCCugG-ACGGGGa -3'
miRNA:   3'- -GGcCC--UC-GGGGGCa--GGugUuUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 33896 0.66 0.868403
Target:  5'- aCCGGGcAGCggaCCCGgcagcggcccggCCACccccgccgGAGCGGGGc -3'
miRNA:   3'- -GGCCC-UCGg--GGGCa-----------GGUG--------UUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 73050 0.66 0.867692
Target:  5'- cCCGGGgucggcGGCCCCC-UCCucCAGGucgugguacuucacCAGGGu -3'
miRNA:   3'- -GGCCC------UCGGGGGcAGGu-GUUU--------------GUCCC- -5'
29140 5' -58.9 NC_006146.1 + 164331 0.66 0.867692
Target:  5'- gUCGGGGuuuuguggcccguuGCCCCCGUuaCCACGGucauuUAGGu -3'
miRNA:   3'- -GGCCCU--------------CGGGGGCA--GGUGUUu----GUCCc -5'
29140 5' -58.9 NC_006146.1 + 449 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5'
29140 5' -58.9 NC_006146.1 + 130841 0.66 0.862659
Target:  5'- gCCGGGAGaCgCUGUCCuACGGACAcgccGGa -3'
miRNA:   3'- -GGCCCUCgGgGGCAGG-UGUUUGU----CCc -5'
29140 5' -58.9 NC_006146.1 + 124646 0.66 0.862659
Target:  5'- gCCGGGuucuucaauGCCUgcauauaaaucuCCGUCCAgCAccCAGGGa -3'
miRNA:   3'- -GGCCCu--------CGGG------------GGCAGGU-GUuuGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 1380 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5'
29140 5' -58.9 NC_006146.1 + 2312 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5'
29140 5' -58.9 NC_006146.1 + 3244 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5'
29140 5' -58.9 NC_006146.1 + 19010 0.66 0.862659
Target:  5'- gUGGGGGCCCCCucgaguuccacGUCUACGAcauCcuGGa -3'
miRNA:   3'- gGCCCUCGGGGG-----------CAGGUGUUu--GucCC- -5'
29140 5' -58.9 NC_006146.1 + 115275 0.66 0.862659
Target:  5'- cUCGGGGGCCCUCuUCUACGAcuacguguACgAGGc -3'
miRNA:   3'- -GGCCCUCGGGGGcAGGUGUU--------UG-UCCc -5'
29140 5' -58.9 NC_006146.1 + 122745 0.66 0.862659
Target:  5'- uCUGGaGGCCCCUacgagGggUACGAGCGGGGg -3'
miRNA:   3'- -GGCCcUCGGGGG-----CagGUGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 107644 0.66 0.862659
Target:  5'- cCCaGGuaGAGCCcCCCGgaggCCAUugccccauacagAAACAGGGu -3'
miRNA:   3'- -GG-CC--CUCGG-GGGCa---GGUG------------UUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 155836 0.66 0.861933
Target:  5'- -aGcGGAGCCCCCG-CCAguGccuccucGCAGGn -3'
miRNA:   3'- ggC-CCUCGGGGGCaGGUguU-------UGUCCc -5'
29140 5' -58.9 NC_006146.1 + 137924 0.66 0.860474
Target:  5'- uCCGGGggcAGCcgcgacccagcgcgCCCCGUUCACG---GGGGa -3'
miRNA:   3'- -GGCCC---UCG--------------GGGGCAGGUGUuugUCCC- -5'
29140 5' -58.9 NC_006146.1 + 22618 0.66 0.855309
Target:  5'- gCuGGAGCUCCUGUUCugGGuGCuGGGg -3'
miRNA:   3'- gGcCCUCGGGGGCAGGugUU-UGuCCC- -5'
29140 5' -58.9 NC_006146.1 + 33244 0.66 0.855309
Target:  5'- gCCGGcGGGUCCgCCGggCCGCugccccgcuccgGGugGGGGg -3'
miRNA:   3'- -GGCC-CUCGGG-GGCa-GGUG------------UUugUCCC- -5'
29140 5' -58.9 NC_006146.1 + 129135 0.66 0.855309
Target:  5'- cCCGGGcgcagGGCCUCCGgcgggaagcCCACccgucuCAGGGc -3'
miRNA:   3'- -GGCCC-----UCGGGGGCa--------GGUGuuu---GUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.