miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29144 5' -60.3 NC_006146.1 + 14321 0.66 0.780321
Target:  5'- gCACCUGCUggaGAacucaCGCAGgGCCguUGCg -3'
miRNA:   3'- gGUGGACGGa--CUgc---GCGUCgCGG--ACG- -5'
29144 5' -60.3 NC_006146.1 + 162323 0.66 0.780321
Target:  5'- gCAuuUCUGCCUGGUGCuGCAGCccgGgCUGCa -3'
miRNA:   3'- gGU--GGACGGACUGCG-CGUCG---CgGACG- -5'
29144 5' -60.3 NC_006146.1 + 67159 0.66 0.780321
Target:  5'- gCCGCU--CCUGA-GCGCGGCGUccgggaggaaCUGCu -3'
miRNA:   3'- -GGUGGacGGACUgCGCGUCGCG----------GACG- -5'
29144 5' -60.3 NC_006146.1 + 14133 0.66 0.777636
Target:  5'- gCgGCCUacaGCCaggUGuACGCGCuggccguggagcugAGCGUCUGCg -3'
miRNA:   3'- -GgUGGA---CGG---AC-UGCGCG--------------UCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 105830 0.66 0.771327
Target:  5'- cCCuCCUGCCccGCGCcgccgaguagacGCAGUGCC-GCu -3'
miRNA:   3'- -GGuGGACGGacUGCG------------CGUCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 156151 0.66 0.771327
Target:  5'- cCCGCCUGCCUGACcuCGUucucaaagAGCcCCgagaccgGCu -3'
miRNA:   3'- -GGUGGACGGACUGc-GCG--------UCGcGGa------CG- -5'
29144 5' -60.3 NC_006146.1 + 65241 0.66 0.771327
Target:  5'- -gACCUcGCUUcccgugaacGACGC-CGGCGCUUGCc -3'
miRNA:   3'- ggUGGA-CGGA---------CUGCGcGUCGCGGACG- -5'
29144 5' -60.3 NC_006146.1 + 93582 0.66 0.771327
Target:  5'- aCCAUCaGCCUGGgcaUGCGCGaccCGCCggGCu -3'
miRNA:   3'- -GGUGGaCGGACU---GCGCGUc--GCGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 44780 0.66 0.771327
Target:  5'- -uGCCgUGCCgggcucaggGGgGCGCAGCGUCUa- -3'
miRNA:   3'- ggUGG-ACGGa--------CUgCGCGUCGCGGAcg -5'
29144 5' -60.3 NC_006146.1 + 168096 0.66 0.762217
Target:  5'- aCCGCCUugGUCUGGaagGCcuGCuGGCGCCUGg -3'
miRNA:   3'- -GGUGGA--CGGACUg--CG--CG-UCGCGGACg -5'
29144 5' -60.3 NC_006146.1 + 108571 0.66 0.762217
Target:  5'- -gGCUUGgCUGGCG-GCGGCGUCUcugGCc -3'
miRNA:   3'- ggUGGACgGACUGCgCGUCGCGGA---CG- -5'
29144 5' -60.3 NC_006146.1 + 104659 0.66 0.762217
Target:  5'- cCCACCguggagaaUGCCUG-CGCcgcgauagagggGCAGCuggGCCUGg -3'
miRNA:   3'- -GGUGG--------ACGGACuGCG------------CGUCG---CGGACg -5'
29144 5' -60.3 NC_006146.1 + 10835 0.66 0.753
Target:  5'- gCCACaggUGCCUGACuGUGCcGCuccUCUGCg -3'
miRNA:   3'- -GGUGg--ACGGACUG-CGCGuCGc--GGACG- -5'
29144 5' -60.3 NC_006146.1 + 154980 0.66 0.753
Target:  5'- gCACg-GCCU--CGCGCAGgGCCcgGCa -3'
miRNA:   3'- gGUGgaCGGAcuGCGCGUCgCGGa-CG- -5'
29144 5' -60.3 NC_006146.1 + 60311 0.66 0.753
Target:  5'- -uGCCUGCCUGACGgucgagacccacCGCAacCGCUgguuUGCg -3'
miRNA:   3'- ggUGGACGGACUGC------------GCGUc-GCGG----ACG- -5'
29144 5' -60.3 NC_006146.1 + 60363 0.66 0.752073
Target:  5'- -aGCCUcuuugaacaggagGUCUccGAgGUGCAGCGCCUGg -3'
miRNA:   3'- ggUGGA-------------CGGA--CUgCGCGUCGCGGACg -5'
29144 5' -60.3 NC_006146.1 + 42678 0.66 0.749285
Target:  5'- cCCGCggugggCUGCCUGAgGCuggcagagcccccCAGCGCCcGCu -3'
miRNA:   3'- -GGUG------GACGGACUgCGc------------GUCGCGGaCG- -5'
29144 5' -60.3 NC_006146.1 + 144693 0.66 0.743684
Target:  5'- gCGCCcuUGCCUGGagGCGagacugGGCGgCUGCg -3'
miRNA:   3'- gGUGG--ACGGACUg-CGCg-----UCGCgGACG- -5'
29144 5' -60.3 NC_006146.1 + 140688 0.66 0.743684
Target:  5'- cCgGCCaGCCcGGCggGCGCAGCGgcccUCUGCu -3'
miRNA:   3'- -GgUGGaCGGaCUG--CGCGUCGC----GGACG- -5'
29144 5' -60.3 NC_006146.1 + 129900 0.66 0.743684
Target:  5'- aCCACgUGUCUcucUGCGCccuggGGCGCCgGCg -3'
miRNA:   3'- -GGUGgACGGAcu-GCGCG-----UCGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.