miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 116118 0.66 0.530257
Target:  5'- cUGCCcaa-GGCGCGcucccuggcGGCCCUGCGCUg -3'
miRNA:   3'- uACGGucucCCGCGC---------CUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 169176 0.66 0.530257
Target:  5'- -cGCCugcagGGGGGGCcgGCGGGgcgUCCCGuCGUCa -3'
miRNA:   3'- uaCGG-----UCUCCCG--CGCCU---GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 168244 0.66 0.530257
Target:  5'- -cGCCugcagGGGGGGCcgGCGGGgcgUCCCGuCGUCa -3'
miRNA:   3'- uaCGG-----UCUCCCG--CGCCU---GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 66459 0.66 0.530257
Target:  5'- cUGCC-GAGGGCGCcGcCCCUGU-CCa -3'
miRNA:   3'- uACGGuCUCCCGCGcCuGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 167312 0.66 0.530257
Target:  5'- -cGCCugcagGGGGGGCcgGCGGGgcgUCCCGuCGUCa -3'
miRNA:   3'- uaCGG-----UCUCCCG--CGCCU---GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 9150 0.66 0.530257
Target:  5'- uUGCCucuuucGGGGacgGCGGGCUcccaCCGUGCCa -3'
miRNA:   3'- uACGGuc----UCCCg--CGCCUGG----GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 11989 0.66 0.530257
Target:  5'- cUGCCAG-GGGCagaagagcucGCuGACUCCgGUGCCc -3'
miRNA:   3'- uACGGUCuCCCG----------CGcCUGGGG-CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 41831 0.66 0.530257
Target:  5'- -gGCCGGAugucGCGgGGGCUguCUGCGCCg -3'
miRNA:   3'- uaCGGUCUcc--CGCgCCUGG--GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 102901 0.66 0.530257
Target:  5'- -cGCCAGGGGcCGUGuGGCguggCUGCGCCc -3'
miRNA:   3'- uaCGGUCUCCcGCGC-CUGg---GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 52965 0.66 0.529331
Target:  5'- -cGCCGGAGaaGGCcgguagugcgcagGCGGACCugCCG-GCCg -3'
miRNA:   3'- uaCGGUCUC--CCG-------------CGCCUGG--GGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 19967 0.66 0.527481
Target:  5'- -gGCCGG-GGGCGUcugcgaggucaggaGGcCCCaCGaCGCCg -3'
miRNA:   3'- uaCGGUCuCCCGCG--------------CCuGGG-GC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 99818 0.66 0.526557
Target:  5'- -gGCgAGGGGGUguucggggccucgGUGGAauaggugaagacguCCCCGCGCg -3'
miRNA:   3'- uaCGgUCUCCCG-------------CGCCU--------------GGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 155847 0.66 0.521025
Target:  5'- -cGCCAGuGccuccucgcaGGCccgGCGGGCCCUG-GCCa -3'
miRNA:   3'- uaCGGUCuC----------CCG---CGCCUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 52863 0.66 0.521025
Target:  5'- -cGCCcGGGGGCuccagguccGUGGuCCUCGCgGCCc -3'
miRNA:   3'- uaCGGuCUCCCG---------CGCCuGGGGCG-CGG- -5'
29147 5' -65.4 NC_006146.1 + 148754 0.66 0.518268
Target:  5'- uUGCCAGAguagggaugagccgGGGCGCaacagcacGAuCCCCgGUGCCu -3'
miRNA:   3'- uACGGUCU--------------CCCGCGc-------CU-GGGG-CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 53175 0.66 0.511857
Target:  5'- -gGCCGGAaGGCuCGGccucgGCCCCG-GCCu -3'
miRNA:   3'- uaCGGUCUcCCGcGCC-----UGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92229 0.66 0.511857
Target:  5'- cUGCU--GGGGgGCGGGCCCgGC-CUg -3'
miRNA:   3'- uACGGucUCCCgCGCCUGGGgCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 92319 0.66 0.511857
Target:  5'- cUGCU--GGGGgGCGGGCCCgGC-CUg -3'
miRNA:   3'- uACGGucUCCCgCGCCUGGGgCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 115734 0.66 0.511857
Target:  5'- -aGCCu--GGGaCGCGGucacccCCCUGCGCa -3'
miRNA:   3'- uaCGGucuCCC-GCGCCu-----GGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 47531 0.66 0.511857
Target:  5'- aGUGUCGG-GGGCGCcgccucGGuccuCCUCGCgGCCu -3'
miRNA:   3'- -UACGGUCuCCCGCG------CCu---GGGGCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.