miRNA display CGI


Results 1 - 20 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 101255 0.66 0.93811
Target:  5'- gAGGAGGACCGcGgGCCcauuAGCcGcCCCCa -3'
miRNA:   3'- -UUCUCCUGGC-CaUGGu---UUGcCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 167878 0.66 0.93811
Target:  5'- cGGGGGAgccCCGGggcgGCCc-GgGGACCCUc -3'
miRNA:   3'- uUCUCCU---GGCCa---UGGuuUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 52805 0.66 0.93811
Target:  5'- --uGGGACUGGUugCAcgaGGCcGugCCCa -3'
miRNA:   3'- uucUCCUGGCCAugGU---UUGcCugGGG- -5'
29151 3' -55.8 NC_006146.1 + 169742 0.66 0.93811
Target:  5'- cGGGGGAgccCCGGggcgGCCc-GgGGACCCUc -3'
miRNA:   3'- uUCUCCU---GGCCa---UGGuuUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 168810 0.66 0.93811
Target:  5'- cGGGGGAgccCCGGggcgGCCc-GgGGACCCUc -3'
miRNA:   3'- uUCUCCU---GGCCa---UGGuuUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 104120 0.66 0.93811
Target:  5'- --uGGGcCCGGUGuCCAGGuCGcACCCCg -3'
miRNA:   3'- uucUCCuGGCCAU-GGUUU-GCcUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 129277 0.66 0.93811
Target:  5'- --uGGGGCUGGUcugcgcccggGCCcAGCGGAccagccCCCCg -3'
miRNA:   3'- uucUCCUGGCCA----------UGGuUUGCCU------GGGG- -5'
29151 3' -55.8 NC_006146.1 + 70720 0.66 0.93811
Target:  5'- cAGGAGGAgCGGggggcuuauUGCCccccucGCGGACgCCg -3'
miRNA:   3'- -UUCUCCUgGCC---------AUGGuu----UGCCUGgGG- -5'
29151 3' -55.8 NC_006146.1 + 71594 0.66 0.937634
Target:  5'- cAGcAGGuCUGGcccugACCAGGCGGgagauuaACCCCa -3'
miRNA:   3'- uUC-UCCuGGCCa----UGGUUUGCC-------UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 156920 0.66 0.933245
Target:  5'- -cGAGGcCUGGgugGCgGcgcuGACGGGCUCCg -3'
miRNA:   3'- uuCUCCuGGCCa--UGgU----UUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 30208 0.66 0.933245
Target:  5'- cAGAGGGCCGcugcgcccGCCGGGCuGGccggauACCCCg -3'
miRNA:   3'- uUCUCCUGGCca------UGGUUUG-CC------UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 44025 0.66 0.933245
Target:  5'- gGAGGGGGCg---GCCGA--GGGCCCCg -3'
miRNA:   3'- -UUCUCCUGgccaUGGUUugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 6438 0.66 0.933245
Target:  5'- -uGuGGGCCcuggGGU-CC-AugGGGCCCCa -3'
miRNA:   3'- uuCuCCUGG----CCAuGGuUugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 70860 0.66 0.933245
Target:  5'- uGAGGGaacacGACCGcGagaaGCC--GCGGACCCCg -3'
miRNA:   3'- -UUCUC-----CUGGC-Ca---UGGuuUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 15527 0.66 0.931234
Target:  5'- uGAGccAGGcGCCGGgGCCuuucaggcccuCGGGCCCCu -3'
miRNA:   3'- -UUC--UCC-UGGCCaUGGuuu--------GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 12448 0.66 0.931234
Target:  5'- uGAGccAGGcGCCGGgGCCuuucaggcccuCGGGCCCCu -3'
miRNA:   3'- -UUC--UCC-UGGCCaUGGuuu--------GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 27839 0.66 0.931234
Target:  5'- uGAGccAGGcGCCGGgGCCuuucaggcccuCGGGCCCCu -3'
miRNA:   3'- -UUC--UCC-UGGCCaUGGuuu--------GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 24761 0.66 0.931234
Target:  5'- uGAGccAGGcGCCGGgGCCuuucaggcccuCGGGCCCCu -3'
miRNA:   3'- -UUC--UCC-UGGCCaUGGuuu--------GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 21683 0.66 0.931234
Target:  5'- uGAGccAGGcGCCGGgGCCuuucaggcccuCGGGCCCCu -3'
miRNA:   3'- -UUC--UCC-UGGCCaUGGuuu--------GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 18605 0.66 0.931234
Target:  5'- uGAGccAGGcGCCGGgGCCuuucaggcccuCGGGCCCCu -3'
miRNA:   3'- -UUC--UCC-UGGCCaUGGuuu--------GCCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.