miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 5' -58.9 NC_006146.1 + 123235 0.66 0.831687
Target:  5'- cAGGGCgaGGuUGGGCCCCUG-CguggUCa -3'
miRNA:   3'- aUCCCGggCUuACCUGGGGACaGa---GG- -5'
29152 5' -58.9 NC_006146.1 + 137986 0.66 0.831687
Target:  5'- gGGGGCCCGGcgGGguggggggugcGCCCCcag--CCg -3'
miRNA:   3'- aUCCCGGGCUuaCC-----------UGGGGacagaGG- -5'
29152 5' -58.9 NC_006146.1 + 118777 0.66 0.831687
Target:  5'- gUGGGGCCCGAGcUGGugUCCa------ -3'
miRNA:   3'- -AUCCCGGGCUU-ACCugGGGacagagg -5'
29152 5' -58.9 NC_006146.1 + 157633 0.66 0.823458
Target:  5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3'
miRNA:   3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 38433 0.66 0.823458
Target:  5'- -cGGGCCUcugcUGGcacacauCCCCUGcCUCCg -3'
miRNA:   3'- auCCCGGGcuu-ACCu------GGGGACaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 33371 0.66 0.823458
Target:  5'- -uGGGUCCGcc-GGGCCgCUGccccgCUCCg -3'
miRNA:   3'- auCCCGGGCuuaCCUGGgGACa----GAGG- -5'
29152 5' -58.9 NC_006146.1 + 142243 0.66 0.823458
Target:  5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3'
miRNA:   3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 145321 0.66 0.823458
Target:  5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3'
miRNA:   3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 148399 0.66 0.823458
Target:  5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3'
miRNA:   3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 151477 0.66 0.823458
Target:  5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3'
miRNA:   3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 154555 0.66 0.823458
Target:  5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3'
miRNA:   3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 44969 0.66 0.821792
Target:  5'- gGGGGaCUCGAccgcgguggccGGACCCUUcUCUCCa -3'
miRNA:   3'- aUCCC-GGGCUua---------CCUGGGGAcAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 88827 0.66 0.815064
Target:  5'- -uGGGCCUGA--GGcUCCCUGUaUCCc -3'
miRNA:   3'- auCCCGGGCUuaCCuGGGGACAgAGG- -5'
29152 5' -58.9 NC_006146.1 + 116293 0.66 0.815064
Target:  5'- gAGGcGgCCGGAUGGcGCCCCcgcgGUCcucUCCc -3'
miRNA:   3'- aUCC-CgGGCUUACC-UGGGGa---CAG---AGG- -5'
29152 5' -58.9 NC_006146.1 + 128892 0.66 0.815064
Target:  5'- -cGGGCCCGAAcgcGGGCUUCgUGcUCgUCCg -3'
miRNA:   3'- auCCCGGGCUUa--CCUGGGG-AC-AG-AGG- -5'
29152 5' -58.9 NC_006146.1 + 50901 0.66 0.814216
Target:  5'- -cGGGUgCGGccUGGGCCUCcgugcccaagaugUGUCUCCg -3'
miRNA:   3'- auCCCGgGCUu-ACCUGGGG-------------ACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 158724 0.66 0.809951
Target:  5'- gUAGGaGCCCGA--GGcCCCCgagaucacguagggGUCUCUc -3'
miRNA:   3'- -AUCC-CGGGCUuaCCuGGGGa-------------CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 167642 0.66 0.806512
Target:  5'- cGGGGCCCGGcgcgugccggGGGCCCgggggcgUGUC-CCg -3'
miRNA:   3'- aUCCCGGGCUua--------CCUGGGg------ACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 7929 0.66 0.806512
Target:  5'- gGGGGaCCCGGGaaagGGGCgCCCgccaaCUCCg -3'
miRNA:   3'- aUCCC-GGGCUUa---CCUG-GGGaca--GAGG- -5'
29152 5' -58.9 NC_006146.1 + 62945 0.66 0.806512
Target:  5'- cAGGGCCCuGGA-GGuCUCggCUGUCUUCa -3'
miRNA:   3'- aUCCCGGG-CUUaCCuGGG--GACAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.