miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 139397 0.66 0.948794
Target:  5'- cCGCCGCCugGGguACgggagGGCauCAGGCGa -3'
miRNA:   3'- -GUGGUGGugUCguUG-----UCGgcGUUCGC- -5'
29170 5' -56 NC_006150.1 + 178573 0.66 0.948794
Target:  5'- aCAUCugCACaacgacuuguGGCAGCcggAGCCaGCAAGCc -3'
miRNA:   3'- -GUGGugGUG----------UCGUUG---UCGG-CGUUCGc -5'
29170 5' -56 NC_006150.1 + 8087 0.66 0.948794
Target:  5'- gGCCAgCGCAGUcAguGCCGCccucgcugugAAGCa -3'
miRNA:   3'- gUGGUgGUGUCGuUguCGGCG----------UUCGc -5'
29170 5' -56 NC_006150.1 + 174658 0.66 0.948794
Target:  5'- gCGCCACUucuggcguuACGcCAGCcGCCGCAGGUa -3'
miRNA:   3'- -GUGGUGG---------UGUcGUUGuCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 8530 0.66 0.948794
Target:  5'- gGCCACCACAGCGAUAaCaGCGAa-- -3'
miRNA:   3'- gUGGUGGUGUCGUUGUcGgCGUUcgc -5'
29170 5' -56 NC_006150.1 + 84626 0.66 0.948794
Target:  5'- --aCACgUAUGGCAACAugucccGCCGCAAGCc -3'
miRNA:   3'- gugGUG-GUGUCGUUGU------CGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 181486 0.66 0.948794
Target:  5'- gCACCACgACAacaaCGACAGCgCGCucAGUGg -3'
miRNA:   3'- -GUGGUGgUGUc---GUUGUCG-GCGu-UCGC- -5'
29170 5' -56 NC_006150.1 + 3240 0.66 0.948794
Target:  5'- cCGCCuucCCGCcgAGCAACAGguCUGUAGGCu -3'
miRNA:   3'- -GUGGu--GGUG--UCGUUGUC--GGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 106379 0.66 0.948375
Target:  5'- gGCCugUugGGCAACAGCgucgaugCGCucuacauucagGAGCGc -3'
miRNA:   3'- gUGGugGugUCGUUGUCG-------GCG-----------UUCGC- -5'
29170 5' -56 NC_006150.1 + 214875 0.66 0.944504
Target:  5'- cUACUACgGCGGguGCuGCCGCcucGCGc -3'
miRNA:   3'- -GUGGUGgUGUCguUGuCGGCGuu-CGC- -5'
29170 5' -56 NC_006150.1 + 160150 0.66 0.944504
Target:  5'- aUACUAcCCACGGUGcUGGCCGCcAGUGg -3'
miRNA:   3'- -GUGGU-GGUGUCGUuGUCGGCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 303 0.66 0.944504
Target:  5'- uGCCgagGCCGCGGagGACGGCUGCccgggguuGGCGg -3'
miRNA:   3'- gUGG---UGGUGUCg-UUGUCGGCGu-------UCGC- -5'
29170 5' -56 NC_006150.1 + 102333 0.66 0.943172
Target:  5'- cCACCGCCAgaacuauaaaucucCuuuGCGGCGguuGCCGCGgcGGCGa -3'
miRNA:   3'- -GUGGUGGU--------------Gu--CGUUGU---CGGCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 106542 0.66 0.939985
Target:  5'- gGCCGaacgagUCACAGC-ACAGCCgaGCAcccAGCGa -3'
miRNA:   3'- gUGGU------GGUGUCGuUGUCGG--CGU---UCGC- -5'
29170 5' -56 NC_006150.1 + 47971 0.66 0.939985
Target:  5'- cCGCguCCGgAGCGaaACAGUCGgAGGCGc -3'
miRNA:   3'- -GUGguGGUgUCGU--UGUCGGCgUUCGC- -5'
29170 5' -56 NC_006150.1 + 114159 0.66 0.939985
Target:  5'- uGCCcuGgCGCGGCAGCGGUCGCuucacauGGUGc -3'
miRNA:   3'- gUGG--UgGUGUCGUUGUCGGCGu------UCGC- -5'
29170 5' -56 NC_006150.1 + 135932 0.66 0.939985
Target:  5'- gGCgGCCACAGCuGACGGUgaagagCGCcAGCa -3'
miRNA:   3'- gUGgUGGUGUCG-UUGUCG------GCGuUCGc -5'
29170 5' -56 NC_006150.1 + 121295 0.66 0.935235
Target:  5'- gGCCGCUACGGCcAUuguGCCuCGAGUGu -3'
miRNA:   3'- gUGGUGGUGUCGuUGu--CGGcGUUCGC- -5'
29170 5' -56 NC_006150.1 + 183640 0.66 0.935235
Target:  5'- aACCACCGCuccCAcCAGCCucGCAuGCGg -3'
miRNA:   3'- gUGGUGGUGuc-GUuGUCGG--CGUuCGC- -5'
29170 5' -56 NC_006150.1 + 32479 0.66 0.935235
Target:  5'- gCAgCACCA-GGUAcCAGCCGCGAGg- -3'
miRNA:   3'- -GUgGUGGUgUCGUuGUCGGCGUUCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.