miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2920 3' -57 NC_001493.1 + 103528 0.66 0.883013
Target:  5'- aCCCCGCGACCccGguCGUCAacaccgggugucccaUUGGUg -3'
miRNA:   3'- gGGGGUGCUGGu-CguGUAGU---------------AGCCGg -5'
2920 3' -57 NC_001493.1 + 27618 0.66 0.880231
Target:  5'- -aCCCGCG-CgGGCuCGggAUCGGCCc -3'
miRNA:   3'- ggGGGUGCuGgUCGuGUagUAGCCGG- -5'
2920 3' -57 NC_001493.1 + 78458 0.66 0.880231
Target:  5'- uCCCCCACGacGCCcGUGCcaGUCuggGGCCc -3'
miRNA:   3'- -GGGGGUGC--UGGuCGUG--UAGuagCCGG- -5'
2920 3' -57 NC_001493.1 + 26636 0.66 0.87953
Target:  5'- gCCCCCAagcgacuggugcuCGACgAGCAgGUgGUCGacgauuacccuGCCg -3'
miRNA:   3'- -GGGGGU-------------GCUGgUCGUgUAgUAGC-----------CGG- -5'
2920 3' -57 NC_001493.1 + 53263 0.66 0.878122
Target:  5'- aCCCgCUucuucucgaccgaaGCGGCCAGUACAUCcaagaGGCg -3'
miRNA:   3'- -GGG-GG--------------UGCUGGUCGUGUAGuag--CCGg -5'
2920 3' -57 NC_001493.1 + 10046 0.66 0.873846
Target:  5'- cCCCCUccugcugcugcggcuCGACCGGCucCAUCAauagGGCCu -3'
miRNA:   3'- -GGGGGu--------------GCUGGUCGu-GUAGUag--CCGG- -5'
2920 3' -57 NC_001493.1 + 125600 0.66 0.873846
Target:  5'- cCCCCUccugcugcugcggcuCGACCGGCucCAUCAauagGGCCu -3'
miRNA:   3'- -GGGGGu--------------GCUGGUCGu-GUAGUag--CCGG- -5'
2920 3' -57 NC_001493.1 + 129898 0.66 0.873126
Target:  5'- uCCCCCGCGA---GCuCGUUGagGGCCa -3'
miRNA:   3'- -GGGGGUGCUgguCGuGUAGUagCCGG- -5'
2920 3' -57 NC_001493.1 + 109121 0.66 0.873126
Target:  5'- -gCCCAUGcCCA-CAUGUCAgccucgCGGCCa -3'
miRNA:   3'- ggGGGUGCuGGUcGUGUAGUa-----GCCGG- -5'
2920 3' -57 NC_001493.1 + 14344 0.66 0.873126
Target:  5'- uCCCCCGCGA---GCuCGUUGagGGCCa -3'
miRNA:   3'- -GGGGGUGCUgguCGuGUAGUagCCGG- -5'
2920 3' -57 NC_001493.1 + 100790 0.66 0.873126
Target:  5'- cCCCCCugGACacaCAGU--GUCGUucCGGCg -3'
miRNA:   3'- -GGGGGugCUG---GUCGugUAGUA--GCCGg -5'
2920 3' -57 NC_001493.1 + 72082 0.66 0.868761
Target:  5'- aCCCCACGucguCCAugaACAUCAccuucccgaucgucaUCGGCa -3'
miRNA:   3'- gGGGGUGCu---GGUcg-UGUAGU---------------AGCCGg -5'
2920 3' -57 NC_001493.1 + 13136 0.66 0.86581
Target:  5'- aCCCuguCCGCGACCgaaccgauGGCGaucUCGgcggCGGCCa -3'
miRNA:   3'- -GGG---GGUGCUGG--------UCGUgu-AGUa---GCCGG- -5'
2920 3' -57 NC_001493.1 + 127794 0.66 0.86581
Target:  5'- aUCCCCAUGAUgAGCG-AUCG-CGGgCg -3'
miRNA:   3'- -GGGGGUGCUGgUCGUgUAGUaGCCgG- -5'
2920 3' -57 NC_001493.1 + 12240 0.66 0.86581
Target:  5'- aUCCCCAUGAUgAGCG-AUCG-CGGgCg -3'
miRNA:   3'- -GGGGGUGCUGgUCGUgUAGUaGCCgG- -5'
2920 3' -57 NC_001493.1 + 128690 0.66 0.86581
Target:  5'- aCCCuguCCGCGACCgaaccgauGGCGaucUCGgcggCGGCCa -3'
miRNA:   3'- -GGG---GGUGCUGG--------UCGUgu-AGUa---GCCGG- -5'
2920 3' -57 NC_001493.1 + 107917 0.66 0.86581
Target:  5'- aCCCCCGC-ACCcGUaACAUacggAUCGGUCg -3'
miRNA:   3'- -GGGGGUGcUGGuCG-UGUAg---UAGCCGG- -5'
2920 3' -57 NC_001493.1 + 64772 0.66 0.860566
Target:  5'- gCCCUCugGACgaucacgCGGCGCAccccgguuaucgcgcUCGUCGcaGCCg -3'
miRNA:   3'- -GGGGGugCUG-------GUCGUGU---------------AGUAGC--CGG- -5'
2920 3' -57 NC_001493.1 + 126583 0.66 0.858288
Target:  5'- gCUUCACG-CCAGC-CGUCAUCccgagGGCUc -3'
miRNA:   3'- gGGGGUGCuGGUCGuGUAGUAG-----CCGG- -5'
2920 3' -57 NC_001493.1 + 53413 0.66 0.858288
Target:  5'- -aUCC-CGACCAucGCACGgaguUCGGCCu -3'
miRNA:   3'- ggGGGuGCUGGU--CGUGUagu-AGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.