miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 113097 0.72 0.576406
Target:  5'- cGCCGCCAcCGGGGg---CGGgGCCgCGGa -3'
miRNA:   3'- -CGGCGGU-GCUCCacaaGUUgCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 111666 0.67 0.817095
Target:  5'- cGCgGCCAgGGGGgcgUCGGCgGgCCGGa -3'
miRNA:   3'- -CGgCGGUgCUCCacaAGUUG-CgGGCC- -5'
29374 3' -57.2 NC_006151.1 + 111241 0.67 0.817095
Target:  5'- aGCC-CCAgGAgGGUGUgcagCAGCGaggCCGGg -3'
miRNA:   3'- -CGGcGGUgCU-CCACAa---GUUGCg--GGCC- -5'
29374 3' -57.2 NC_006151.1 + 108152 0.7 0.646438
Target:  5'- cGCCaaGCCGCGGGGUGcUCccccCGCCCc- -3'
miRNA:   3'- -CGG--CGGUGCUCCACaAGuu--GCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 107114 0.78 0.268818
Target:  5'- cGCCGCC-CGAGccgccgCGACGCCCGGg -3'
miRNA:   3'- -CGGCGGuGCUCcacaa-GUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 106794 0.69 0.715901
Target:  5'- gGCCGCgGCGGcGGUGcucgUCGGgGCCCc- -3'
miRNA:   3'- -CGGCGgUGCU-CCACa---AGUUgCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 106654 0.7 0.656458
Target:  5'- cGCCGCggcgcacgugCGCGAGGccg-CGGCGCUCGGc -3'
miRNA:   3'- -CGGCG----------GUGCUCCacaaGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 105635 0.67 0.84176
Target:  5'- cGCCGCCuaccGCGAGcUGcUCAcgcuGCGCCUGc -3'
miRNA:   3'- -CGGCGG----UGCUCcACaAGU----UGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 105053 0.66 0.892635
Target:  5'- cGgCGCCGuCGAGGa----GGCGCCCGa -3'
miRNA:   3'- -CgGCGGU-GCUCCacaagUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 104886 0.66 0.892635
Target:  5'- cGCCuGCUgcGCGAGGUGgUgGACGCggCGGc -3'
miRNA:   3'- -CGG-CGG--UGCUCCACaAgUUGCGg-GCC- -5'
29374 3' -57.2 NC_006151.1 + 104559 0.66 0.857301
Target:  5'- gGCCGCC-CuGGGcGcgCGGCGCgCGGa -3'
miRNA:   3'- -CGGCGGuGcUCCaCaaGUUGCGgGCC- -5'
29374 3' -57.2 NC_006151.1 + 103623 0.66 0.857301
Target:  5'- cGCaCGCCgACGcGGUGgcggCGGCGCUggCGGa -3'
miRNA:   3'- -CG-GCGG-UGCuCCACaa--GUUGCGG--GCC- -5'
29374 3' -57.2 NC_006151.1 + 102922 0.67 0.852719
Target:  5'- gGCgGCCGcCGAGGagcggcugcgcgcgcUGgacgCGGCGCCCGc -3'
miRNA:   3'- -CGgCGGU-GCUCC---------------ACaa--GUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 102680 0.67 0.84176
Target:  5'- cGCCGUggaCGCGGGG------GCGCCCGGc -3'
miRNA:   3'- -CGGCG---GUGCUCCacaaguUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 101884 0.67 0.825488
Target:  5'- cGCCGCCGCG-GGUccagaAGCGgCCGa -3'
miRNA:   3'- -CGGCGGUGCuCCAcaag-UUGCgGGCc -5'
29374 3' -57.2 NC_006151.1 + 100877 0.7 0.686375
Target:  5'- cGCCGugaaCCugGAGGUGcu--GCGCCgCGGc -3'
miRNA:   3'- -CGGC----GGugCUCCACaaguUGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 100165 0.7 0.675439
Target:  5'- cGCCGCCugGAGGa---CAugGCCacccacaCGGg -3'
miRNA:   3'- -CGGCGGugCUCCacaaGUugCGG-------GCC- -5'
29374 3' -57.2 NC_006151.1 + 100071 0.76 0.337197
Target:  5'- cGCgGCCGcCGAGGUGcUCGAgGCgCCGGc -3'
miRNA:   3'- -CGgCGGU-GCUCCACaAGUUgCG-GGCC- -5'
29374 3' -57.2 NC_006151.1 + 99576 0.71 0.626373
Target:  5'- cGCUGCUgcGCGAGGUGg-CGGCGgCCGa -3'
miRNA:   3'- -CGGCGG--UGCUCCACaaGUUGCgGGCc -5'
29374 3' -57.2 NC_006151.1 + 99234 0.66 0.885991
Target:  5'- cGCCGCUGC-AGGUcGUggaGGCGCUCGu -3'
miRNA:   3'- -CGGCGGUGcUCCA-CAag-UUGCGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.