miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 5' -61.8 NC_006151.1 + 121983 0.7 0.371695
Target:  5'- aGCGCaccauGGGCGGCgcgugCCgCUUCCACGcGCg -3'
miRNA:   3'- aUGCG-----CCCGUCGa----GGaGGAGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 119435 0.72 0.298532
Target:  5'- gACGCGGGCAcGUUCgUgggCCGCGGCg -3'
miRNA:   3'- aUGCGCCCGU-CGAGgAggaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 119070 0.68 0.474266
Target:  5'- -cCGCGGGCGcGCccgUCUCgCaggCCGCGGCg -3'
miRNA:   3'- auGCGCCCGU-CGa--GGAG-Ga--GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 118434 0.67 0.549911
Target:  5'- gGCGCGGaggugugcgcGCGGCUCggCCUggCCGCGGa -3'
miRNA:   3'- aUGCGCC----------CGUCGAGgaGGA--GGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 116386 0.68 0.492726
Target:  5'- uUGCGCucGCcgAGCgCCUCCUcggCCACGGCg -3'
miRNA:   3'- -AUGCGccCG--UCGaGGAGGA---GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 112810 0.67 0.549911
Target:  5'- cGCGCGucgcuGCAGCgcgCCUUCgCCACGcGCg -3'
miRNA:   3'- aUGCGCc----CGUCGa--GGAGGaGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 108159 0.68 0.492726
Target:  5'- -cCGCGGGguGCUCC-CC-CCGCcccGCc -3'
miRNA:   3'- auGCGCCCguCGAGGaGGaGGUGc--CG- -5'
29381 5' -61.8 NC_006151.1 + 106367 0.72 0.298532
Target:  5'- gACGCGGGCGcGCg---CCcgCCGCGGCg -3'
miRNA:   3'- aUGCGCCCGU-CGaggaGGa-GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 106204 0.67 0.550884
Target:  5'- --gGCGGuGCGGCUcgcCCUCCccgaccugaugguggCCGCGGUg -3'
miRNA:   3'- augCGCC-CGUCGA---GGAGGa--------------GGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 105812 0.66 0.648767
Target:  5'- gACGCGGacGCGGUg-UUCC-CCACGGUc -3'
miRNA:   3'- aUGCGCC--CGUCGagGAGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 105690 0.71 0.341023
Target:  5'- gGCGCGGGgccgacgcCGGCgcggCCgcgcgCCUCgACGGCg -3'
miRNA:   3'- aUGCGCCC--------GUCGa---GGa----GGAGgUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 102702 0.74 0.220771
Target:  5'- gGCGCGGGCGGCgcggCCgagCCgaaCACGcGCg -3'
miRNA:   3'- aUGCGCCCGUCGa---GGa--GGag-GUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 101865 0.66 0.648767
Target:  5'- --gGCGGcGCAccGCUCCcgCCgccgCCGCGGg -3'
miRNA:   3'- augCGCC-CGU--CGAGGa-GGa---GGUGCCg -5'
29381 5' -61.8 NC_006151.1 + 101711 0.67 0.559658
Target:  5'- --aGCGGGCGGUgcCCUCCgugcacCCgAUGGCc -3'
miRNA:   3'- augCGCCCGUCGa-GGAGGa-----GG-UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 101459 0.68 0.521013
Target:  5'- -cCGUGGGCcugGGcCUCUaCCgCCGCGGCg -3'
miRNA:   3'- auGCGCCCG---UC-GAGGaGGaGGUGCCG- -5'
29381 5' -61.8 NC_006151.1 + 101290 0.72 0.31854
Target:  5'- gGCGCGGGCGGCgCCgcgcugcacugcgUCUUCuCGCGGg -3'
miRNA:   3'- aUGCGCCCGUCGaGG-------------AGGAG-GUGCCg -5'
29381 5' -61.8 NC_006151.1 + 100765 0.68 0.521013
Target:  5'- cUGCGCGaGGCcGCggaCCgCgUCCugGGCg -3'
miRNA:   3'- -AUGCGC-CCGuCGa--GGaGgAGGugCCG- -5'
29381 5' -61.8 NC_006151.1 + 99633 0.66 0.60898
Target:  5'- cGCGCGaGGCccucaacacguGGCUCgC-CUUCCGCGcGCa -3'
miRNA:   3'- aUGCGC-CCG-----------UCGAG-GaGGAGGUGC-CG- -5'
29381 5' -61.8 NC_006151.1 + 97938 0.68 0.473352
Target:  5'- cGCGCccgcccucgucgaGGGCgAGCcacgCCUCCUCCaggucGCGGUg -3'
miRNA:   3'- aUGCG-------------CCCG-UCGa---GGAGGAGG-----UGCCG- -5'
29381 5' -61.8 NC_006151.1 + 97846 0.66 0.599057
Target:  5'- gUGCGCGcGCAGCgcgucgUCCgcgUUCUCgGCGGCc -3'
miRNA:   3'- -AUGCGCcCGUCG------AGG---AGGAGgUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.