miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2940 5' -53.8 NC_001493.1 + 42756 0.65 0.96484
Target:  5'- cCGCCGUGAAgccacaaccgAUCGCCACcaggaagcgaucggGGUuaucGGCGCu -3'
miRNA:   3'- -GUGGCGCUUa---------UAGUGGUG--------------CCG----CUGCG- -5'
2940 5' -53.8 NC_001493.1 + 84201 0.65 0.964507
Target:  5'- aACCGCGGcuacucuaagaugaAUAUCgggauuucaaggaGCC-CGGUGGCGUu -3'
miRNA:   3'- gUGGCGCU--------------UAUAG-------------UGGuGCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 60453 0.66 0.963835
Target:  5'- -uCCGCGGAa--UACCGCGGgcgcgauccccagucUGACGCg -3'
miRNA:   3'- guGGCGCUUauaGUGGUGCC---------------GCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 91269 0.66 0.962464
Target:  5'- -cCCGCGAuucuuUCACCAUGGau-UGCa -3'
miRNA:   3'- guGGCGCUuau--AGUGGUGCCgcuGCG- -5'
2940 5' -53.8 NC_001493.1 + 63945 0.66 0.962464
Target:  5'- -cCCGCGGGcGUCGCC--GGUGugGUc -3'
miRNA:   3'- guGGCGCUUaUAGUGGugCCGCugCG- -5'
2940 5' -53.8 NC_001493.1 + 126430 0.66 0.95888
Target:  5'- aGCCGcCGAGUuugucgCACC-CGGgGAgGCc -3'
miRNA:   3'- gUGGC-GCUUAua----GUGGuGCCgCUgCG- -5'
2940 5' -53.8 NC_001493.1 + 9118 0.66 0.95888
Target:  5'- aGCCGCGGG-GUCAUCcCcGCGACcGCg -3'
miRNA:   3'- gUGGCGCUUaUAGUGGuGcCGCUG-CG- -5'
2940 5' -53.8 NC_001493.1 + 123126 0.66 0.95888
Target:  5'- gACCGCucGGAUAgacgCACCGCGGCucucccugUGCg -3'
miRNA:   3'- gUGGCG--CUUAUa---GUGGUGCCGcu------GCG- -5'
2940 5' -53.8 NC_001493.1 + 7572 0.66 0.95888
Target:  5'- gACCGCucGGAUAgacgCACCGCGGCucucccugUGCg -3'
miRNA:   3'- gUGGCG--CUUAUa---GUGGUGCCGcu------GCG- -5'
2940 5' -53.8 NC_001493.1 + 10876 0.66 0.95888
Target:  5'- aGCCGcCGAGUuugucgCACC-CGGgGAgGCc -3'
miRNA:   3'- gUGGC-GCUUAua----GUGGuGCCgCUgCG- -5'
2940 5' -53.8 NC_001493.1 + 101155 0.66 0.95888
Target:  5'- uCACgGCGcuacUGUCAUCGaGGgGACGCu -3'
miRNA:   3'- -GUGgCGCuu--AUAGUGGUgCCgCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 124673 0.66 0.95888
Target:  5'- aGCCGCGGG-GUCAUCcCcGCGACcGCg -3'
miRNA:   3'- gUGGCGCUUaUAGUGGuGcCGCUG-CG- -5'
2940 5' -53.8 NC_001493.1 + 13186 0.66 0.95888
Target:  5'- aCACCaGgGAG-GUCACCACGaGC-AUGCa -3'
miRNA:   3'- -GUGG-CgCUUaUAGUGGUGC-CGcUGCG- -5'
2940 5' -53.8 NC_001493.1 + 128740 0.66 0.95888
Target:  5'- aCACCaGgGAG-GUCACCACGaGC-AUGCa -3'
miRNA:   3'- -GUGG-CgCUUaUAGUGGUGC-CGcUGCG- -5'
2940 5' -53.8 NC_001493.1 + 34370 0.66 0.95888
Target:  5'- gCACCGCGGcccuccAUCACCAUcgugugucgGGUGuuguACGCg -3'
miRNA:   3'- -GUGGCGCUua----UAGUGGUG---------CCGC----UGCG- -5'
2940 5' -53.8 NC_001493.1 + 73620 0.66 0.957003
Target:  5'- cCACCGCGGuccccccugCGCUGCGgugcacacugagcaGCGACGUg -3'
miRNA:   3'- -GUGGCGCUuaua-----GUGGUGC--------------CGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 111757 0.66 0.95662
Target:  5'- aCACC-CGug-AUCACCACgGGCGGucccgauccagaauuCGCa -3'
miRNA:   3'- -GUGGcGCuuaUAGUGGUG-CCGCU---------------GCG- -5'
2940 5' -53.8 NC_001493.1 + 85649 0.66 0.955067
Target:  5'- uGCCGCGGcgGUC-CCAcCGGUGuACa- -3'
miRNA:   3'- gUGGCGCUuaUAGuGGU-GCCGC-UGcg -5'
2940 5' -53.8 NC_001493.1 + 24390 0.66 0.955067
Target:  5'- -uUCGgGAcucaggGUCGCCAaccacuCGGUGACGCg -3'
miRNA:   3'- guGGCgCUua----UAGUGGU------GCCGCUGCG- -5'
2940 5' -53.8 NC_001493.1 + 95742 0.66 0.955067
Target:  5'- uCGCCcgguGUGAugAUAUCACCGCGGCucaucAUGUa -3'
miRNA:   3'- -GUGG----CGCU--UAUAGUGGUGCCGc----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.