miRNA display CGI


Results 41 - 60 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 129147 0.66 0.449116
Target:  5'- aGCGCCGgcgcacacUGGCucuCGGCcaCGUCGCGCa -3'
miRNA:   3'- gCGCGGU--------ACCG---GCCGacGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 129114 0.73 0.170238
Target:  5'- aGCGCCAgGGCCgaGGC-GCGCUGgGCg -3'
miRNA:   3'- gCGCGGUaCCGG--CCGaCGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 128239 0.67 0.375862
Target:  5'- gGCGCCAggucgccgaucaggUGGUggaagcggcacugcgCGcGCaGCGCCGCGCg -3'
miRNA:   3'- gCGCGGU--------------ACCG---------------GC-CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 128166 0.72 0.190896
Target:  5'- gCGCGCgAUGGCguaguugaaccaGGCgagcGUGCCGCGCUc -3'
miRNA:   3'- -GCGCGgUACCGg-----------CCGa---CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 127556 0.66 0.457833
Target:  5'- uCGuCGUCGUGGCCGccGCcgGCGCCuCGUUc -3'
miRNA:   3'- -GC-GCGGUACCGGC--CGa-CGCGGcGCGA- -5'
29602 3' -65.7 NC_006151.1 + 127435 0.71 0.225468
Target:  5'- gGCGCuCGUGcgcgagaGCCGGCgGCGCacgaaGCGCUg -3'
miRNA:   3'- gCGCG-GUAC-------CGGCCGaCGCGg----CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 126410 0.66 0.42353
Target:  5'- cCGCGUCggGGCgaUGGCcacGCGCCGCcgGCa -3'
miRNA:   3'- -GCGCGGuaCCG--GCCGa--CGCGGCG--CGa -5'
29602 3' -65.7 NC_006151.1 + 125464 0.77 0.083129
Target:  5'- aGCGCCGUGGCCacGGCcGCGCUcggccaGCGCg -3'
miRNA:   3'- gCGCGGUACCGG--CCGaCGCGG------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 123068 0.67 0.390814
Target:  5'- nCGaCGCCGaGcGCCGGCgGCGCCuguaCGCg -3'
miRNA:   3'- -GC-GCGGUaC-CGGCCGaCGCGGc---GCGa -5'
29602 3' -65.7 NC_006151.1 + 123027 0.73 0.169016
Target:  5'- gGaCGCCGUGGCgugggcggaccugcCGGCcgcgGCGCUGCGCg -3'
miRNA:   3'- gC-GCGGUACCG--------------GCCGa---CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 122777 0.69 0.283636
Target:  5'- gGCuGCuCGUGGgCGGCUGCGCgGC-CUc -3'
miRNA:   3'- gCG-CG-GUACCgGCCGACGCGgCGcGA- -5'
29602 3' -65.7 NC_006151.1 + 122474 0.69 0.275529
Target:  5'- gGCGCCGaGGCCGGggacgcgggcgagaCggcGCGCCgGCGCg -3'
miRNA:   3'- gCGCGGUaCCGGCC--------------Ga--CGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 122387 0.71 0.225991
Target:  5'- gCGCGCCGcgGGCgCGcGCUG-GCgGCGCUc -3'
miRNA:   3'- -GCGCGGUa-CCG-GC-CGACgCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 122280 0.66 0.42353
Target:  5'- gGCGCCu--GCuCGGCUGCG-UGUGCg -3'
miRNA:   3'- gCGCGGuacCG-GCCGACGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 121984 0.67 0.367384
Target:  5'- gCGCaCCAUGGgCGGCgcGUGCCGCu-- -3'
miRNA:   3'- -GCGcGGUACCgGCCGa-CGCGGCGcga -5'
29602 3' -65.7 NC_006151.1 + 121074 0.68 0.330531
Target:  5'- aCGUGCUcgcagacGGgCGGCgGCGCCGgGCUg -3'
miRNA:   3'- -GCGCGGua-----CCgGCCGaCGCGGCgCGA- -5'
29602 3' -65.7 NC_006151.1 + 121035 0.67 0.367384
Target:  5'- aCGCGgCAcuuUGuGCUGGcCUGC-CCGCGCg -3'
miRNA:   3'- -GCGCgGU---AC-CGGCC-GACGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 120806 0.7 0.253469
Target:  5'- gCGCGCCGcgcgcgagGuGCUGGaC-GCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUa-------C-CGGCC-GaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 120755 0.77 0.089664
Target:  5'- cCGCGUCAUGGCCugGGUgcgGCGCC-CGCUg -3'
miRNA:   3'- -GCGCGGUACCGG--CCGa--CGCGGcGCGA- -5'
29602 3' -65.7 NC_006151.1 + 120342 0.72 0.191803
Target:  5'- gCGCGCCcgcGUGGCCgGGCUcgcggGCGCCuaccaGCGCc -3'
miRNA:   3'- -GCGCGG---UACCGG-CCGA-----CGCGG-----CGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.