miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30404 3' -57.9 NC_006548.1 + 7147 0.66 0.455201
Target:  5'- cGCCGCuuacGCgGUGCGCGCucacGCAc--- -3'
miRNA:   3'- aCGGCG----UGgCGCGCGCGuu--CGUuucu -5'
30404 3' -57.9 NC_006548.1 + 21743 0.66 0.455201
Target:  5'- gGCCuggacGCGCCgGUGC-CGCAGGCGGAu- -3'
miRNA:   3'- aCGG-----CGUGG-CGCGcGCGUUCGUUUcu -5'
30404 3' -57.9 NC_006548.1 + 12815 0.66 0.425456
Target:  5'- cGCCaGUGCCGCGCGaGCGGcGCGGu-- -3'
miRNA:   3'- aCGG-CGUGGCGCGCgCGUU-CGUUucu -5'
30404 3' -57.9 NC_006548.1 + 12151 0.66 0.424485
Target:  5'- gGCCGCcgagcaguaucGCCGCGUgcugguucgagcgGCGCAugcugAGUggGGAc -3'
miRNA:   3'- aCGGCG-----------UGGCGCG-------------CGCGU-----UCGuuUCU- -5'
30404 3' -57.9 NC_006548.1 + 16179 0.66 0.415801
Target:  5'- gUGCCGCACgGCuucgGCGCGguGcGCGGu-- -3'
miRNA:   3'- -ACGGCGUGgCG----CGCGCguU-CGUUucu -5'
30404 3' -57.9 NC_006548.1 + 28600 0.67 0.406281
Target:  5'- cGCCGCgaccugGCCG-GCGC-CGAGCAGGa- -3'
miRNA:   3'- aCGGCG------UGGCgCGCGcGUUCGUUUcu -5'
30404 3' -57.9 NC_006548.1 + 12451 0.67 0.406281
Target:  5'- gGUCGUaggugACCaGCGCGCGCAgugcccAGCcuGGAu -3'
miRNA:   3'- aCGGCG-----UGG-CGCGCGCGU------UCGuuUCU- -5'
30404 3' -57.9 NC_006548.1 + 16500 0.67 0.406281
Target:  5'- aGCaGCAgCUGCaGCGCGUggGCuGGGAc -3'
miRNA:   3'- aCGgCGU-GGCG-CGCGCGuuCGuUUCU- -5'
30404 3' -57.9 NC_006548.1 + 36635 0.67 0.406281
Target:  5'- gUGCCaGCGCCGCaugaggccgGCGCGCugaucuGGUucuacGAGGAu -3'
miRNA:   3'- -ACGG-CGUGGCG---------CGCGCGu-----UCG-----UUUCU- -5'
30404 3' -57.9 NC_006548.1 + 16969 0.67 0.406281
Target:  5'- aUGCC-CGCCG-GCaUGCAGGCGGAGc -3'
miRNA:   3'- -ACGGcGUGGCgCGcGCGUUCGUUUCu -5'
30404 3' -57.9 NC_006548.1 + 33965 0.67 0.3969
Target:  5'- aGCUGUACCGUG-GCGCucGGCcgucGAAGGc -3'
miRNA:   3'- aCGGCGUGGCGCgCGCGu-UCG----UUUCU- -5'
30404 3' -57.9 NC_006548.1 + 25935 0.67 0.3969
Target:  5'- cGUCGUAacggcCCGCGCGgGCcAGCAGGc- -3'
miRNA:   3'- aCGGCGU-----GGCGCGCgCGuUCGUUUcu -5'
30404 3' -57.9 NC_006548.1 + 19181 0.67 0.3969
Target:  5'- cGCUGCGCUGCcCGCGuUGAGCAc--- -3'
miRNA:   3'- aCGGCGUGGCGcGCGC-GUUCGUuucu -5'
30404 3' -57.9 NC_006548.1 + 21803 0.67 0.3969
Target:  5'- cUGCgGCACCgGCGCGUcCAGGCc---- -3'
miRNA:   3'- -ACGgCGUGG-CGCGCGcGUUCGuuucu -5'
30404 3' -57.9 NC_006548.1 + 1934 0.67 0.3969
Target:  5'- cUGgUGCAgCCGCGCGCGCuugcccgcGGCAu--- -3'
miRNA:   3'- -ACgGCGU-GGCGCGCGCGu-------UCGUuucu -5'
30404 3' -57.9 NC_006548.1 + 36401 0.67 0.378561
Target:  5'- gGCCGCA-UGCccaGCGC-AGCGAGGAu -3'
miRNA:   3'- aCGGCGUgGCGcg-CGCGuUCGUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 13106 0.67 0.369607
Target:  5'- aGCaGCAggUCGCGCGCGCcaaccAGGcCGAGGAg -3'
miRNA:   3'- aCGgCGU--GGCGCGCGCG-----UUC-GUUUCU- -5'
30404 3' -57.9 NC_006548.1 + 29716 0.67 0.369607
Target:  5'- cUGCCGCACCG-GCacCGCuGGCAgcGGc -3'
miRNA:   3'- -ACGGCGUGGCgCGc-GCGuUCGUuuCU- -5'
30404 3' -57.9 NC_006548.1 + 28714 0.67 0.360799
Target:  5'- gGCCGgGCUGCGuUGCGUGAGUAcGAGc -3'
miRNA:   3'- aCGGCgUGGCGC-GCGCGUUCGU-UUCu -5'
30404 3' -57.9 NC_006548.1 + 27094 0.67 0.360799
Target:  5'- aGCCaGUACgcaGCGCcucaaugcugcuGUGCAAGCGGGGAa -3'
miRNA:   3'- aCGG-CGUGg--CGCG------------CGCGUUCGUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.