miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 9625 0.68 0.62214
Target:  5'- cGCGUgcgccccUGGCGAUaccucgGACAUCuccuggcaccugGCCGACGCg -3'
miRNA:   3'- cCGCA-------GCUGCUG------UUGUAG------------CGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 17552 0.68 0.600969
Target:  5'- gGGuCGUccaguugcCGACGACAggcuGCAUCGCuucggccagcugCGGCGCc -3'
miRNA:   3'- -CC-GCA--------GCUGCUGU----UGUAGCG------------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 2950 0.71 0.422189
Target:  5'- gGGCcaUGGcCGACAACAUCGCCuucGACGa -3'
miRNA:   3'- -CCGcaGCU-GCUGUUGUAGCGG---CUGCg -5'
30406 3' -53.9 NC_006548.1 + 30361 0.74 0.286497
Target:  5'- uGGCGUaCGGCuAUAGCcgUGCCGgACGCg -3'
miRNA:   3'- -CCGCA-GCUGcUGUUGuaGCGGC-UGCG- -5'
30406 3' -53.9 NC_006548.1 + 21306 0.66 0.711874
Target:  5'- -cCGUCGGCGGCGGgAauuucggUGCUGAUGCc -3'
miRNA:   3'- ccGCAGCUGCUGUUgUa------GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 36828 0.68 0.650035
Target:  5'- --aGUCGAcCGGCGcgaggcucucugcgaGCGUCGCCGA-GCu -3'
miRNA:   3'- ccgCAGCU-GCUGU---------------UGUAGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 35878 0.69 0.566666
Target:  5'- uGGgGUCaugccaGACGACAACGaacugguUCGCCG-UGCc -3'
miRNA:   3'- -CCgCAG------CUGCUGUUGU-------AGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 33603 0.75 0.251777
Target:  5'- -aCGUCGACGuuCAGC-UCGCUGACGUc -3'
miRNA:   3'- ccGCAGCUGCu-GUUGuAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 2098 0.68 0.645575
Target:  5'- aGGCGUacaUGGCGA-AGCAccaCGCUGACGUc -3'
miRNA:   3'- -CCGCA---GCUGCUgUUGUa--GCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22068 0.78 0.163483
Target:  5'- uGGCGgugCGACGGCccAGCA-CGCCGAUGUu -3'
miRNA:   3'- -CCGCa--GCUGCUG--UUGUaGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 21395 0.69 0.586537
Target:  5'- gGGCGUCGGCcgucaGCGcaucaccgcgagugACGUUGCCGcCGUa -3'
miRNA:   3'- -CCGCAGCUGc----UGU--------------UGUAGCGGCuGCG- -5'
30406 3' -53.9 NC_006548.1 + 21434 0.68 0.623256
Target:  5'- uGGCGgcCGGCGGCAGaGUCGCgGcaacCGCu -3'
miRNA:   3'- -CCGCa-GCUGCUGUUgUAGCGgCu---GCG- -5'
30406 3' -53.9 NC_006548.1 + 18568 0.69 0.535045
Target:  5'- cGGCGgccaCGACGGaccggguCAUUGgCGACGCu -3'
miRNA:   3'- -CCGCa---GCUGCUguu----GUAGCgGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 15756 0.7 0.492518
Target:  5'- cGC-UCGACGugGcgcguauagagcACAUCGCCGA-GCa -3'
miRNA:   3'- cCGcAGCUGCugU------------UGUAGCGGCUgCG- -5'
30406 3' -53.9 NC_006548.1 + 20561 0.73 0.35825
Target:  5'- cGGCGUCGACGccuucuauuGCGGguUCGgagaaCGACGCc -3'
miRNA:   3'- -CCGCAGCUGC---------UGUUguAGCg----GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 19751 0.74 0.309082
Target:  5'- aGGCGUCGAU-ACGG-GUUGUCGGCGCg -3'
miRNA:   3'- -CCGCAGCUGcUGUUgUAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 22214 0.66 0.754613
Target:  5'- cGGCcgagCGAUGuuCAGCcgcgcuUCGCCGAUGUa -3'
miRNA:   3'- -CCGca--GCUGCu-GUUGu-----AGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 17466 0.66 0.72271
Target:  5'- cGGCGaacUCgGugGAaGGCGUcggCGCCGugGCc -3'
miRNA:   3'- -CCGC---AG-CugCUgUUGUA---GCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 33021 0.67 0.689973
Target:  5'- aGCGcCGcugcaccgggcGCGcCAGuugaAUCGCCGACGCg -3'
miRNA:   3'- cCGCaGC-----------UGCuGUUg---UAGCGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 13428 0.67 0.655607
Target:  5'- cGGCGUCaGAacCGGCGGCGggccaggUCGCUGuuugaGCGCc -3'
miRNA:   3'- -CCGCAG-CU--GCUGUUGU-------AGCGGC-----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.