miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30494 5' -58.3 NC_006548.1 + 13128 0.66 0.44168
Target:  5'- cCAgGCCgAGGAGCaacuGCUGCAGguacAGCa -3'
miRNA:   3'- aGUgCGG-UCCUCGgc--CGACGUU----UCGg -5'
30494 5' -58.3 NC_006548.1 + 25644 0.66 0.44168
Target:  5'- --uCGCCGGGGGagaGGaaGCAAAGCg -3'
miRNA:   3'- aguGCGGUCCUCgg-CCgaCGUUUCGg -5'
30494 5' -58.3 NC_006548.1 + 7695 0.66 0.440693
Target:  5'- gCGcCGCCAGGuggaaaccaugacGGCCGaccagcGCgcgGCAGAGCUg -3'
miRNA:   3'- aGU-GCGGUCC-------------UCGGC------CGa--CGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 9952 0.66 0.439708
Target:  5'- gCAUuaCAGGAGCCaccgccauggccGCUGCAaccaAAGCCc -3'
miRNA:   3'- aGUGcgGUCCUCGGc-----------CGACGU----UUCGG- -5'
30494 5' -58.3 NC_006548.1 + 33118 0.66 0.435779
Target:  5'- gUCAUGCCcucgacaacauaccgGGGcuGGCCGGUgcucggGCAGcGGCCc -3'
miRNA:   3'- -AGUGCGG---------------UCC--UCGGCCGa-----CGUU-UCGG- -5'
30494 5' -58.3 NC_006548.1 + 22720 0.66 0.43187
Target:  5'- -gGCGCagaAGGugcucguGCCGGCcgGCGAugaaguGGCCa -3'
miRNA:   3'- agUGCGg--UCCu------CGGCCGa-CGUU------UCGG- -5'
30494 5' -58.3 NC_006548.1 + 20998 0.66 0.43187
Target:  5'- cUCACGCCAuuGcAGCgCGaGC-GCAGAGCUa -3'
miRNA:   3'- -AGUGCGGU--CcUCG-GC-CGaCGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 7188 0.66 0.43187
Target:  5'- -gGCGCaAGGAcUCGGg-GCAGAGCCg -3'
miRNA:   3'- agUGCGgUCCUcGGCCgaCGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 1201 0.66 0.43187
Target:  5'- aUCGcCGCaCAGGcguuGCUGGCcgcGCAGacGGCCa -3'
miRNA:   3'- -AGU-GCG-GUCCu---CGGCCGa--CGUU--UCGG- -5'
30494 5' -58.3 NC_006548.1 + 36857 0.66 0.43187
Target:  5'- cCGCGCCuGGcGCUGGUUcauucGCAgcGAGUCg -3'
miRNA:   3'- aGUGCGGuCCuCGGCCGA-----CGU--UUCGG- -5'
30494 5' -58.3 NC_006548.1 + 37779 0.66 0.422189
Target:  5'- -gACGCCGGucGCCGGCacUGUgauGAGCg -3'
miRNA:   3'- agUGCGGUCcuCGGCCG--ACGu--UUCGg -5'
30494 5' -58.3 NC_006548.1 + 20890 0.66 0.422189
Target:  5'- gUCACaaaGCCGGcGGCCGagguGCUGCGcAGCUu -3'
miRNA:   3'- -AGUG---CGGUCcUCGGC----CGACGUuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 21351 0.66 0.422189
Target:  5'- -gACGcCCAGGGGCgagCGGUUGCcgcgacucuGCCg -3'
miRNA:   3'- agUGC-GGUCCUCG---GCCGACGuuu------CGG- -5'
30494 5' -58.3 NC_006548.1 + 32868 0.66 0.422189
Target:  5'- uUCGUGCUGGGGGCCuugcgcuGCUGCGcgguGAGUCa -3'
miRNA:   3'- -AGUGCGGUCCUCGGc------CGACGU----UUCGG- -5'
30494 5' -58.3 NC_006548.1 + 36611 0.66 0.419311
Target:  5'- cUCGCGCgGGGAugcgucgauacgguGCCaGCgccGCAugAGGCCg -3'
miRNA:   3'- -AGUGCGgUCCU--------------CGGcCGa--CGU--UUCGG- -5'
30494 5' -58.3 NC_006548.1 + 22196 0.66 0.416444
Target:  5'- uUCGCGCCuGGGGGCCGcacGCgucuuucaucuaccGCGAucgccuGGCCg -3'
miRNA:   3'- -AGUGCGG-UCCUCGGC---CGa-------------CGUU------UCGG- -5'
30494 5' -58.3 NC_006548.1 + 28704 0.66 0.41264
Target:  5'- cUACGgCAaGGGCCgGGCUGCGuuGCg -3'
miRNA:   3'- aGUGCgGUcCUCGG-CCGACGUuuCGg -5'
30494 5' -58.3 NC_006548.1 + 24312 0.66 0.41264
Target:  5'- -aGgGCCGGGucugGGCCGGCgaGCGccuGCCc -3'
miRNA:   3'- agUgCGGUCC----UCGGCCGa-CGUuu-CGG- -5'
30494 5' -58.3 NC_006548.1 + 362 0.66 0.409801
Target:  5'- aUCACGUUuguuuuuccggucaAGGAugaGCUGGCUcGCAAGcGCCu -3'
miRNA:   3'- -AGUGCGG--------------UCCU---CGGCCGA-CGUUU-CGG- -5'
30494 5' -58.3 NC_006548.1 + 37545 0.66 0.403225
Target:  5'- -gGCGCCGGcgguuGGGCUgaguGGaCUGUggGGCCa -3'
miRNA:   3'- agUGCGGUC-----CUCGG----CC-GACGuuUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.