miRNA display CGI


Results 1 - 20 of 568 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31089 3' -68.7 NC_006560.1 + 150452 0.66 0.410838
Target:  5'- cCGg-CGCGGGUuuG-GGCggggccggCCCCGCCCc -3'
miRNA:   3'- -GCagGUGCCCGggCgCCG--------GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 79659 0.66 0.410838
Target:  5'- aCGUCC--GGcGCCCcccgcucgGCGcCCCCCGCCg -3'
miRNA:   3'- -GCAGGugCC-CGGG--------CGCcGGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 123 0.66 0.410838
Target:  5'- cCGg-CGCGGGUuuG-GGCggggccggCCCCGCCCc -3'
miRNA:   3'- -GCagGUGCCCGggCgCCG--------GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 95395 0.66 0.410838
Target:  5'- --aCCACGuGGaCC-CGGCCCugCUGCCCa -3'
miRNA:   3'- gcaGGUGC-CCgGGcGCCGGG--GGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 99780 0.66 0.410838
Target:  5'- aCG-CCGCcgGGGCCCcaaacGgGGCCCCggggcgugGCCCg -3'
miRNA:   3'- -GCaGGUG--CCCGGG-----CgCCGGGGg-------CGGG- -5'
31089 3' -68.7 NC_006560.1 + 147444 0.66 0.410838
Target:  5'- -cUCC-Ccu-CCCGCGGCCuCCCGCCa -3'
miRNA:   3'- gcAGGuGcccGGGCGCCGG-GGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 51859 0.66 0.410838
Target:  5'- --cCCugGGGCgCgGCGcGUCCgCGCUCg -3'
miRNA:   3'- gcaGGugCCCG-GgCGC-CGGGgGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 44683 0.66 0.410838
Target:  5'- uGUCCGuCGGGgCCGCGGacaagucggCCgacgugcucgUCGCCCa -3'
miRNA:   3'- gCAGGU-GCCCgGGCGCCg--------GG----------GGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 128404 0.66 0.410838
Target:  5'- uCGUUCGCGGagaucgccGCCCGCuucuGCCgCCGCUUc -3'
miRNA:   3'- -GCAGGUGCC--------CGGGCGc---CGGgGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 5459 0.66 0.410838
Target:  5'- cCGcCCGgGGGCgCCGgGGCUCCgaGCgCg -3'
miRNA:   3'- -GCaGGUgCCCG-GGCgCCGGGGg-CGgG- -5'
31089 3' -68.7 NC_006560.1 + 59862 0.66 0.410838
Target:  5'- aG-CgGCGGGCCCugaGGgCCCCGCg- -3'
miRNA:   3'- gCaGgUGCCCGGGcg-CCgGGGGCGgg -5'
31089 3' -68.7 NC_006560.1 + 19529 0.66 0.41005
Target:  5'- aGgCCACGGaGCCCGgGGCguuCUCCuccggcgGCCCc -3'
miRNA:   3'- gCaGGUGCC-CGGGCgCCG---GGGG-------CGGG- -5'
31089 3' -68.7 NC_006560.1 + 69155 0.66 0.40769
Target:  5'- --aCCAgacgUGGGCCCugauccagaacacCGGCuCCCCGUCCg -3'
miRNA:   3'- gcaGGU----GCCCGGGc------------GCCG-GGGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 39015 0.66 0.402995
Target:  5'- gGcCCAgGGGCuguCCGgGGCCgcgaacugcguCCCGCCg -3'
miRNA:   3'- gCaGGUgCCCG---GGCgCCGG-----------GGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 116894 0.66 0.402995
Target:  5'- gGUCguCGGccGCCuCGCGGCU-CUGCCCc -3'
miRNA:   3'- gCAGguGCC--CGG-GCGCCGGgGGCGGG- -5'
31089 3' -68.7 NC_006560.1 + 144417 0.66 0.402995
Target:  5'- -nUCCGCGacccaaccCCCGCcgcccaGGCCCCCGaCCCc -3'
miRNA:   3'- gcAGGUGCcc------GGGCG------CCGGGGGC-GGG- -5'
31089 3' -68.7 NC_006560.1 + 79855 0.66 0.402995
Target:  5'- --aCCGagcCGGG-CCGCccccGCCCCCGCCa -3'
miRNA:   3'- gcaGGU---GCCCgGGCGc---CGGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 84069 0.66 0.402995
Target:  5'- gGUCgACcccuGGGCCCuguuCGGgcaccCCCCCGCCg -3'
miRNA:   3'- gCAGgUG----CCCGGGc---GCC-----GGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 4449 0.66 0.402995
Target:  5'- gCGcCgGCGGccucguagcGCCgGCGcGCCUCCGCCa -3'
miRNA:   3'- -GCaGgUGCC---------CGGgCGC-CGGGGGCGGg -5'
31089 3' -68.7 NC_006560.1 + 58681 0.66 0.402995
Target:  5'- aGUCgGCGGuGCUcggCGCGGCgCCCuccuCCCu -3'
miRNA:   3'- gCAGgUGCC-CGG---GCGCCGgGGGc---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.