miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31093 3' -56.9 NC_006560.1 + 94324 0.66 0.891878
Target:  5'- --cAGGGCGCgaCCGUcgccCGGCGGCUGg -3'
miRNA:   3'- auaUUCUGCGg-GGCAcu--GCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 78911 0.66 0.891878
Target:  5'- --gGGGGCGCCCgCGUacCGGCGccccGCCGa -3'
miRNA:   3'- auaUUCUGCGGG-GCAcuGCUGC----CGGC- -5'
31093 3' -56.9 NC_006560.1 + 69838 0.66 0.891878
Target:  5'- --gGGGACGCCCUGcgGGCcacguGCGcGCCGc -3'
miRNA:   3'- auaUUCUGCGGGGCa-CUGc----UGC-CGGC- -5'
31093 3' -56.9 NC_006560.1 + 39933 0.66 0.891878
Target:  5'- -cUGGGugGCuggggCCCGUcgguaggcggGGCGGCGGCgCGg -3'
miRNA:   3'- auAUUCugCG-----GGGCA----------CUGCUGCCG-GC- -5'
31093 3' -56.9 NC_006560.1 + 101843 0.66 0.891878
Target:  5'- --cGAG-CGCCCCGcgcuCGuaGCGGCCGc -3'
miRNA:   3'- auaUUCuGCGGGGCacu-GC--UGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 73688 0.66 0.891878
Target:  5'- ----cGGCgGCCCCcUGGCGgugGCGGCCc -3'
miRNA:   3'- auauuCUG-CGGGGcACUGC---UGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 142421 0.66 0.891878
Target:  5'- ---cGGACcccggGCCCCGccgcccgGcGCGGCGGCCGc -3'
miRNA:   3'- auauUCUG-----CGGGGCa------C-UGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 112530 0.66 0.891878
Target:  5'- cGUGGGGCGgCaCGUGcuggcgcccGCGACGGUCGc -3'
miRNA:   3'- aUAUUCUGCgGgGCAC---------UGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 68550 0.66 0.891878
Target:  5'- --cGAGcccCGCCCCG-GGgGGCGcGCCGc -3'
miRNA:   3'- auaUUCu--GCGGGGCaCUgCUGC-CGGC- -5'
31093 3' -56.9 NC_006560.1 + 83981 0.66 0.891878
Target:  5'- gGUucGcCGCCCUGcuGCgGGCGGCCGg -3'
miRNA:   3'- aUAuuCuGCGGGGCacUG-CUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 72219 0.66 0.885136
Target:  5'- ----cGACGuCCCCGgGACGccgcCGGUCGg -3'
miRNA:   3'- auauuCUGC-GGGGCaCUGCu---GCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 85547 0.66 0.885136
Target:  5'- --gGGGGCGCCCgUGgggGGCGgggGCGGCuCGg -3'
miRNA:   3'- auaUUCUGCGGG-GCa--CUGC---UGCCG-GC- -5'
31093 3' -56.9 NC_006560.1 + 110312 0.66 0.885136
Target:  5'- ----cGuCGCCCUGU--UGGCGGCCGc -3'
miRNA:   3'- auauuCuGCGGGGCAcuGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 42600 0.66 0.885136
Target:  5'- --aGAGACGCgcgucCCgCGUGACG-CGGUCc -3'
miRNA:   3'- auaUUCUGCG-----GG-GCACUGCuGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 119216 0.66 0.885136
Target:  5'- --cGGGGCGaCCgUGcgGACGACGGaCCGc -3'
miRNA:   3'- auaUUCUGC-GGgGCa-CUGCUGCC-GGC- -5'
31093 3' -56.9 NC_006560.1 + 23665 0.66 0.885136
Target:  5'- --cGAGcuGCGCCUgGUGcGCGACGcGCUGa -3'
miRNA:   3'- auaUUC--UGCGGGgCAC-UGCUGC-CGGC- -5'
31093 3' -56.9 NC_006560.1 + 71608 0.66 0.885136
Target:  5'- ----cGAUGCCCUGUcggccgaggccGuCGACGGCUGc -3'
miRNA:   3'- auauuCUGCGGGGCA-----------CuGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 75120 0.66 0.885136
Target:  5'- ----cGGgGCCCUGggGGCcGCGGCCGc -3'
miRNA:   3'- auauuCUgCGGGGCa-CUGcUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 76610 0.66 0.885136
Target:  5'- --cGAGGCGUgCCGccgGACGACcGCCc -3'
miRNA:   3'- auaUUCUGCGgGGCa--CUGCUGcCGGc -5'
31093 3' -56.9 NC_006560.1 + 115769 0.66 0.878174
Target:  5'- --cGAGGCGCCCgGgccgccgcagGACGGCGaGCgGc -3'
miRNA:   3'- auaUUCUGCGGGgCa---------CUGCUGC-CGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.