miRNA display CGI


Results 1 - 20 of 514 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31094 5' -68.1 NC_006560.1 + 39324 0.66 0.42819
Target:  5'- gGCgGUGGGgcggggccgcccgccCUCGCGCCUgCGCCcccGGc -3'
miRNA:   3'- gCGgCGCCC---------------GAGCGCGGGgGCGGu--CC- -5'
31094 5' -68.1 NC_006560.1 + 58714 0.66 0.424938
Target:  5'- uCGCCGCGaaGGUcaCGCagacGCCgCCGCCGGa -3'
miRNA:   3'- -GCGGCGC--CCGa-GCG----CGGgGGCGGUCc -5'
31094 5' -68.1 NC_006560.1 + 130827 0.66 0.424938
Target:  5'- gGCCGUGacGGCgCGCGUCCUggUGCCccGGGg -3'
miRNA:   3'- gCGGCGC--CCGaGCGCGGGG--GCGG--UCC- -5'
31094 5' -68.1 NC_006560.1 + 55503 0.66 0.424938
Target:  5'- gGgCGCGGGgUCgGCGCCCagcaGCCAc- -3'
miRNA:   3'- gCgGCGCCCgAG-CGCGGGgg--CGGUcc -5'
31094 5' -68.1 NC_006560.1 + 29193 0.66 0.424938
Target:  5'- uCGCCGuCGGaC-CGCcgUCCCGCCGGGa -3'
miRNA:   3'- -GCGGC-GCCcGaGCGcgGGGGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 38453 0.66 0.424938
Target:  5'- uGCCgGUGGGUgucgaggaucUCGaugaGCCCCgccaugcaggCGCCGGGg -3'
miRNA:   3'- gCGG-CGCCCG----------AGCg---CGGGG----------GCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 93693 0.66 0.424938
Target:  5'- aCGCCGCGGuCUCGgaGCCgaccgcggCCCGgCAGa -3'
miRNA:   3'- -GCGGCGCCcGAGCg-CGG--------GGGCgGUCc -5'
31094 5' -68.1 NC_006560.1 + 51985 0.66 0.424938
Target:  5'- gGCgGCGGGCcugccgGCGCggugaccgccgCCCCGCCAc- -3'
miRNA:   3'- gCGgCGCCCGag----CGCG-----------GGGGCGGUcc -5'
31094 5' -68.1 NC_006560.1 + 66321 0.66 0.424938
Target:  5'- gCGCCcCGGGUUgccggugugCGCGgCCUCGUgGGGg -3'
miRNA:   3'- -GCGGcGCCCGA---------GCGCgGGGGCGgUCC- -5'
31094 5' -68.1 NC_006560.1 + 25337 0.66 0.424938
Target:  5'- gGCCGCcGGC-CGCGCCgacacgcugCUCGCCGa- -3'
miRNA:   3'- gCGGCGcCCGaGCGCGG---------GGGCGGUcc -5'
31094 5' -68.1 NC_006560.1 + 118895 0.66 0.424938
Target:  5'- gGCCcUGGGCU-GCGCCauccgcgcggCCCuCCAGGg -3'
miRNA:   3'- gCGGcGCCCGAgCGCGG----------GGGcGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 55559 0.66 0.424938
Target:  5'- cCGCCGUGcagacGGcCUCGuCGCCCCCGaacuCCAu- -3'
miRNA:   3'- -GCGGCGC-----CC-GAGC-GCGGGGGC----GGUcc -5'
31094 5' -68.1 NC_006560.1 + 101711 0.66 0.424938
Target:  5'- gCGgCGCGGuugacCUCGUcggcguggGCCCggCCGCCGGGg -3'
miRNA:   3'- -GCgGCGCCc----GAGCG--------CGGG--GGCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 18851 0.66 0.424938
Target:  5'- gGCCGCgucucgccucuGGGCggggcCGcCGCCccgCCCGCCGuGGg -3'
miRNA:   3'- gCGGCG-----------CCCGa----GC-GCGG---GGGCGGU-CC- -5'
31094 5' -68.1 NC_006560.1 + 26939 0.66 0.424938
Target:  5'- gGCCGCGGgGC-CGCGgaggccggggaaCCCCacaGgCGGGg -3'
miRNA:   3'- gCGGCGCC-CGaGCGC------------GGGGg--CgGUCC- -5'
31094 5' -68.1 NC_006560.1 + 29127 0.66 0.424938
Target:  5'- cCGCCccuugggggaGUGGGCUCccgGCGCauauaaCGCCGGGg -3'
miRNA:   3'- -GCGG----------CGCCCGAG---CGCGggg---GCGGUCC- -5'
31094 5' -68.1 NC_006560.1 + 35318 0.66 0.424938
Target:  5'- gGCU-CGGGCUCG-GCCCUC-CCGGa -3'
miRNA:   3'- gCGGcGCCCGAGCgCGGGGGcGGUCc -5'
31094 5' -68.1 NC_006560.1 + 59530 0.66 0.424127
Target:  5'- gGCgGgCGGGCUCGggucgguuaaauaCGCCUCCgGCCcGGc -3'
miRNA:   3'- gCGgC-GCCCGAGC-------------GCGGGGG-CGGuCC- -5'
31094 5' -68.1 NC_006560.1 + 64991 0.66 0.421701
Target:  5'- cCGCCGCggggGGGCUUGUguccggaGCCCCUuccccggacugacgGCCcGGa -3'
miRNA:   3'- -GCGGCG----CCCGAGCG-------CGGGGG--------------CGGuCC- -5'
31094 5' -68.1 NC_006560.1 + 107786 0.66 0.416873
Target:  5'- aCGCggcgacccucgUGCGGGUcgUCGCGCCCaCCaGCCcgcGGu -3'
miRNA:   3'- -GCG-----------GCGCCCG--AGCGCGGG-GG-CGGu--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.