miRNA display CGI


Results 1 - 20 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 5' -54.7 NC_006560.1 + 78804 0.66 0.958465
Target:  5'- cGGCGugGAgguucucgccgggcuCGCCG-CGAagGACGACCc -3'
miRNA:   3'- -UCGCugCU---------------GUGGCuGCUg-CUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 30552 0.66 0.958097
Target:  5'- aGGCGccccgagGCGGCGCCG-CGGCGcgcgcgccucgcgccGCGGCCc -3'
miRNA:   3'- -UCGC-------UGCUGUGGCuGCUGC---------------UGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 133372 0.66 0.956981
Target:  5'- cGCGACcGCcuGCCuaagGGCGGCGGCcGCCGu -3'
miRNA:   3'- uCGCUGcUG--UGG----CUGCUGCUGuUGGU- -5'
31104 5' -54.7 NC_006560.1 + 142357 0.66 0.956981
Target:  5'- cGCGccuCgGGgGCCGGgGGCGGCGGCCu -3'
miRNA:   3'- uCGCu--G-CUgUGGCUgCUGCUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 101370 0.66 0.956981
Target:  5'- gGGCGGCGAgGCCGG-GAa-ACAGCUg -3'
miRNA:   3'- -UCGCUGCUgUGGCUgCUgcUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 58234 0.66 0.956981
Target:  5'- gAGCGACGGgggccgggggcCGCCGA-GGCGAgCcGCCGg -3'
miRNA:   3'- -UCGCUGCU-----------GUGGCUgCUGCU-GuUGGU- -5'
31104 5' -54.7 NC_006560.1 + 66527 0.66 0.956981
Target:  5'- cGGUGACGuGCGuCCgGACGGCcucGGCGGCCu -3'
miRNA:   3'- -UCGCUGC-UGU-GG-CUGCUG---CUGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 76029 0.66 0.956981
Target:  5'- gAGCgGACGAC-CCGGCuccGCGcCGACCc -3'
miRNA:   3'- -UCG-CUGCUGuGGCUGc--UGCuGUUGGu -5'
31104 5' -54.7 NC_006560.1 + 119213 0.66 0.956981
Target:  5'- cGGCGggGCGACcguGCgGACGACgGACcGCCc -3'
miRNA:   3'- -UCGC--UGCUG---UGgCUGCUG-CUGuUGGu -5'
31104 5' -54.7 NC_006560.1 + 94326 0.66 0.956981
Target:  5'- gGGCG-CGACcgucgcCCGGCGGCuGGCgGACCGc -3'
miRNA:   3'- -UCGCuGCUGu-----GGCUGCUG-CUG-UUGGU- -5'
31104 5' -54.7 NC_006560.1 + 5724 0.66 0.956981
Target:  5'- cGGcCGGCGGCGCCGccCGuCGAgGAUCGc -3'
miRNA:   3'- -UC-GCUGCUGUGGCu-GCuGCUgUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 145525 0.66 0.954687
Target:  5'- gGGCGGgccucgacccgcccuCGGCGCCGGgGACGccCGGCCc -3'
miRNA:   3'- -UCGCU---------------GCUGUGGCUgCUGCu-GUUGGu -5'
31104 5' -54.7 NC_006560.1 + 73875 0.66 0.953113
Target:  5'- uGGcCGGgGACGCCcGCGAcCGGCGguACCAc -3'
miRNA:   3'- -UC-GCUgCUGUGGcUGCU-GCUGU--UGGU- -5'
31104 5' -54.7 NC_006560.1 + 66983 0.66 0.953113
Target:  5'- gAGCGugGugGCCGucUGGCG-CGGCg- -3'
miRNA:   3'- -UCGCugCugUGGCu-GCUGCuGUUGgu -5'
31104 5' -54.7 NC_006560.1 + 109854 0.66 0.953113
Target:  5'- cGCGACGACAUCG-CGccaAUGGCGcuCCGg -3'
miRNA:   3'- uCGCUGCUGUGGCuGC---UGCUGUu-GGU- -5'
31104 5' -54.7 NC_006560.1 + 51923 0.66 0.953113
Target:  5'- cGGCGGCuccuCAUgGGCGACGaggagGCGGCCGc -3'
miRNA:   3'- -UCGCUGcu--GUGgCUGCUGC-----UGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 26685 0.66 0.953113
Target:  5'- gGGgGACGGgGCCcGCGACGA--GCCc -3'
miRNA:   3'- -UCgCUGCUgUGGcUGCUGCUguUGGu -5'
31104 5' -54.7 NC_006560.1 + 146085 0.66 0.953113
Target:  5'- gAGCGGCGggcccACugCGGCuccGCGuCGGCCAg -3'
miRNA:   3'- -UCGCUGC-----UGugGCUGc--UGCuGUUGGU- -5'
31104 5' -54.7 NC_006560.1 + 111819 0.66 0.953113
Target:  5'- cGCGGaccugGugACCGuCGGCGACAAgCu -3'
miRNA:   3'- uCGCUg----CugUGGCuGCUGCUGUUgGu -5'
31104 5' -54.7 NC_006560.1 + 73032 0.66 0.952714
Target:  5'- cGCGAgGugGCCGagugcucGCGGCuGACggUCAa -3'
miRNA:   3'- uCGCUgCugUGGC-------UGCUG-CUGuuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.