miRNA display CGI


Results 1 - 20 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31134 5' -62.9 NC_006560.1 + 61595 0.66 0.665635
Target:  5'- uCGGCGCugaaGCGcacguaguucucgauGGCGGCcagggcCGCCgCGUCCa -3'
miRNA:   3'- -GCCGCGc---CGC---------------UCGCUGu-----GCGG-GCAGG- -5'
31134 5' -62.9 NC_006560.1 + 121251 0.66 0.664676
Target:  5'- cCGuGCGUGGCGAcGUcgaccuuGGCGCGCUucuucagcggcccggCGUCCu -3'
miRNA:   3'- -GC-CGCGCCGCU-CG-------CUGUGCGG---------------GCAGG- -5'
31134 5' -62.9 NC_006560.1 + 132534 0.66 0.661796
Target:  5'- gGGCG-GGCGAuucagacgaaGCGguagaagaGCGCGgCCGUCUg -3'
miRNA:   3'- gCCGCgCCGCU----------CGC--------UGUGCgGGCAGG- -5'
31134 5' -62.9 NC_006560.1 + 42636 0.66 0.661796
Target:  5'- -cGCGCGccaGGGCGGCgaACGCCUGcCCc -3'
miRNA:   3'- gcCGCGCcg-CUCGCUG--UGCGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 72627 0.66 0.661796
Target:  5'- -cGCGCGGCacGCcGCGaGCCCGUUCg -3'
miRNA:   3'- gcCGCGCCGcuCGcUGUgCGGGCAGG- -5'
31134 5' -62.9 NC_006560.1 + 54905 0.66 0.661796
Target:  5'- gGGgGCGGU-AGcCGAgGCGCUCGggggCCg -3'
miRNA:   3'- gCCgCGCCGcUC-GCUgUGCGGGCa---GG- -5'
31134 5' -62.9 NC_006560.1 + 2707 0.66 0.661796
Target:  5'- gCGGCGgcCGGCG-GCGGC-CGCCagcagGcCCa -3'
miRNA:   3'- -GCCGC--GCCGCuCGCUGuGCGGg----CaGG- -5'
31134 5' -62.9 NC_006560.1 + 11506 0.66 0.661796
Target:  5'- gGGCGcCGGgGAgGCGcuCGuCGCCCGaCCc -3'
miRNA:   3'- gCCGC-GCCgCU-CGCu-GU-GCGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 145545 0.66 0.661796
Target:  5'- uCGGCGcCGGgGAcgccCGGCccCGCCCGgCCg -3'
miRNA:   3'- -GCCGC-GCCgCUc---GCUGu-GCGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 125045 0.66 0.661796
Target:  5'- uGGCGCGGCGgucgccGGCGGacuucCGgGCCUuccUCCg -3'
miRNA:   3'- gCCGCGCCGC------UCGCU-----GUgCGGGc--AGG- -5'
31134 5' -62.9 NC_006560.1 + 95194 0.66 0.661796
Target:  5'- -aGCGCGGCGAGCucgaGAagAUGCUgcgggucagCGUCCa -3'
miRNA:   3'- gcCGCGCCGCUCG----CUg-UGCGG---------GCAGG- -5'
31134 5' -62.9 NC_006560.1 + 51156 0.66 0.661796
Target:  5'- gCGGCGC-GCGAggccgccuuucuGgGGCGCGUCCucgacGUCCu -3'
miRNA:   3'- -GCCGCGcCGCU------------CgCUGUGCGGG-----CAGG- -5'
31134 5' -62.9 NC_006560.1 + 119212 0.66 0.661796
Target:  5'- cCGGCGgGGCGAccguGCgGACgACGgaCCGcCCa -3'
miRNA:   3'- -GCCGCgCCGCU----CG-CUG-UGCg-GGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 146414 0.66 0.661796
Target:  5'- gGGCGgaGGCgGAGCGGCGgaGCCCcgaggagCCg -3'
miRNA:   3'- gCCGCg-CCG-CUCGCUGUg-CGGGca-----GG- -5'
31134 5' -62.9 NC_006560.1 + 2423 0.66 0.661796
Target:  5'- aGGCGCGuGCGcacgcgguAGCG-CACGUugCCG-CCg -3'
miRNA:   3'- gCCGCGC-CGC--------UCGCuGUGCG--GGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 69402 0.66 0.661796
Target:  5'- cCGGCGCGuccaggacgccuGCGAGCaggcGCACGCgCGgcUCUg -3'
miRNA:   3'- -GCCGCGC------------CGCUCGc---UGUGCGgGC--AGG- -5'
31134 5' -62.9 NC_006560.1 + 133358 0.66 0.661796
Target:  5'- aGGuCGCGGUcccccGCGAC-CGCCUG-CCu -3'
miRNA:   3'- gCC-GCGCCGcu---CGCUGuGCGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 142337 0.66 0.661796
Target:  5'- uGGCGCaGcCGGGCcccgcGCGCGCCuCGggggCCg -3'
miRNA:   3'- gCCGCGcC-GCUCGc----UGUGCGG-GCa---GG- -5'
31134 5' -62.9 NC_006560.1 + 77238 0.66 0.660836
Target:  5'- aGGCGUaccugagGGCGAGCGGa--GaCCCGgggCCc -3'
miRNA:   3'- gCCGCG-------CCGCUCGCUgugC-GGGCa--GG- -5'
31134 5' -62.9 NC_006560.1 + 143326 0.66 0.660836
Target:  5'- --cCGCGGCGAccccgagGCGGCggGCGCCCcccUCCu -3'
miRNA:   3'- gccGCGCCGCU-------CGCUG--UGCGGGc--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.