miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3120 3' -63.5 NC_001493.1 + 79291 0.66 0.605829
Target:  5'- uGCGCGGaCGCgaacacgCUGGuCCA-GGACCUGGa -3'
miRNA:   3'- -CGCGCCaGCG-------GGUC-GGUgCCUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 63508 0.66 0.597167
Target:  5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3'
miRNA:   3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 63385 0.66 0.597167
Target:  5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3'
miRNA:   3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 63304 0.66 0.597167
Target:  5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3'
miRNA:   3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 63259 0.66 0.597167
Target:  5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3'
miRNA:   3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 63214 0.66 0.597167
Target:  5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3'
miRNA:   3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 63169 0.66 0.597167
Target:  5'- gGUGUGGUgGUCa--CCACGGugUCGGu -3'
miRNA:   3'- -CGCGCCAgCGGgucGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 36229 0.66 0.597167
Target:  5'- uGCGCGGgggUGCUCAGUggggcggguugCGCGGACgaUUGGg -3'
miRNA:   3'- -CGCGCCa--GCGGGUCG-----------GUGCCUG--GGCC- -5'
3120 3' -63.5 NC_001493.1 + 110355 0.66 0.597167
Target:  5'- cCGUGGUCGCCCuGgUugGGcGCuUCGGu -3'
miRNA:   3'- cGCGCCAGCGGGuCgGugCC-UG-GGCC- -5'
3120 3' -63.5 NC_001493.1 + 94348 0.66 0.587564
Target:  5'- cGCGUGGUaCGaCC--UCACGGcCCCGGg -3'
miRNA:   3'- -CGCGCCA-GCgGGucGGUGCCuGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 13412 0.66 0.587564
Target:  5'- cGCGCGGUCGUggGGCCcACGGuga-GGg -3'
miRNA:   3'- -CGCGCCAGCGggUCGG-UGCCugggCC- -5'
3120 3' -63.5 NC_001493.1 + 13995 0.66 0.587564
Target:  5'- gGCaGCGGUauuaaCCCGGgUGCGGGCCCa- -3'
miRNA:   3'- -CG-CGCCAgc---GGGUCgGUGCCUGGGcc -5'
3120 3' -63.5 NC_001493.1 + 128966 0.66 0.587564
Target:  5'- cGCGCGGUCGUggGGCCcACGGuga-GGg -3'
miRNA:   3'- -CGCGCCAGCGggUCGG-UGCCugggCC- -5'
3120 3' -63.5 NC_001493.1 + 129550 0.66 0.587564
Target:  5'- gGCaGCGGUauuaaCCCGGgUGCGGGCCCa- -3'
miRNA:   3'- -CG-CGCCAgc---GGGUCgGUGCCUGGGcc -5'
3120 3' -63.5 NC_001493.1 + 29385 0.66 0.587564
Target:  5'- cCGCGGgCGCUCGgacuGUCGCGGACCa-- -3'
miRNA:   3'- cGCGCCaGCGGGU----CGGUGCCUGGgcc -5'
3120 3' -63.5 NC_001493.1 + 29294 0.66 0.57799
Target:  5'- aCGCGGggGCaCGGCC-CGGACCaaaaaGGa -3'
miRNA:   3'- cGCGCCagCGgGUCGGuGCCUGGg----CC- -5'
3120 3' -63.5 NC_001493.1 + 108782 0.66 0.57799
Target:  5'- gGCGCGGcuccgaUCacgggaggagguGCCgGGCC-UGGACCCGa -3'
miRNA:   3'- -CGCGCC------AG------------CGGgUCGGuGCCUGGGCc -5'
3120 3' -63.5 NC_001493.1 + 40657 0.66 0.57799
Target:  5'- cGUGCuacgCGUCCacGGCU-CGGACCCGGg -3'
miRNA:   3'- -CGCGcca-GCGGG--UCGGuGCCUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 61476 0.66 0.56845
Target:  5'- cGCGCGGcUGUUCGGCCGgGGugUCc- -3'
miRNA:   3'- -CGCGCCaGCGGGUCGGUgCCugGGcc -5'
3120 3' -63.5 NC_001493.1 + 29506 0.66 0.56845
Target:  5'- ----cGUUGCuCCAGCuCGCGGACCCuGGc -3'
miRNA:   3'- cgcgcCAGCG-GGUCG-GUGCCUGGG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.