miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31214 5' -61.3 NC_006560.1 + 8930 0.66 0.726887
Target:  5'- cGGGGCGCGGggggcuuuuaugcgCCGcgggGCGCCGaCGUCa-- -3'
miRNA:   3'- -CCUCGUGCCa-------------GGC----UGCGGC-GCGGagu -5'
31214 5' -61.3 NC_006560.1 + 127663 0.66 0.723105
Target:  5'- cGGGC-CGGUcuuguuucCCGACGCgggCGCGCCg-- -3'
miRNA:   3'- cCUCGuGCCA--------GGCUGCG---GCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 76027 0.66 0.723105
Target:  5'- cGGAGCggACGacCCGGCuCCGCGCCg-- -3'
miRNA:   3'- -CCUCG--UGCcaGGCUGcGGCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 2304 0.66 0.723105
Target:  5'- cGGGCGCG--CCGGCGgCGgcCGCCUCGc -3'
miRNA:   3'- cCUCGUGCcaGGCUGCgGC--GCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 142321 0.66 0.723105
Target:  5'- uGGAGCucccccccugugGCGcagCCGGgcccCGCgCGCGCCUCGg -3'
miRNA:   3'- -CCUCG------------UGCca-GGCU----GCG-GCGCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 74310 0.66 0.723105
Target:  5'- -cGGCcgGCGGggaCGACGCCGcCGCCg-- -3'
miRNA:   3'- ccUCG--UGCCag-GCUGCGGC-GCGGagu -5'
31214 5' -61.3 NC_006560.1 + 43971 0.66 0.723105
Target:  5'- cGGGCGUGGUgcCCGACcCCGCccGCCUCc -3'
miRNA:   3'- cCUCGUGCCA--GGCUGcGGCG--CGGAGu -5'
31214 5' -61.3 NC_006560.1 + 108243 0.66 0.723105
Target:  5'- -cAGCGCGGgaaacaCCGGCGaCCGCuUCUCGc -3'
miRNA:   3'- ccUCGUGCCa-----GGCUGC-GGCGcGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 43767 0.66 0.723105
Target:  5'- cGuGCGCGGgCCGGCGCCGuUGaCCg-- -3'
miRNA:   3'- cCuCGUGCCaGGCUGCGGC-GC-GGagu -5'
31214 5' -61.3 NC_006560.1 + 36984 0.66 0.723105
Target:  5'- cGAGU-CGucuucgucgucGcCCGACGCCGCGgCCUCGc -3'
miRNA:   3'- cCUCGuGC-----------CaGGCUGCGGCGC-GGAGU- -5'
31214 5' -61.3 NC_006560.1 + 95077 0.66 0.723105
Target:  5'- aGAGCugGG-CgGACGUCGCggGCCg-- -3'
miRNA:   3'- cCUCGugCCaGgCUGCGGCG--CGGagu -5'
31214 5' -61.3 NC_006560.1 + 74207 0.66 0.723105
Target:  5'- cGGAGCuCGGgccuggCCGA-GCUcgaGCGCUUCGa -3'
miRNA:   3'- -CCUCGuGCCa-----GGCUgCGG---CGCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 96887 0.66 0.723105
Target:  5'- gGGAGCacACGG-CCuACGCCGCggaccGCUUCc -3'
miRNA:   3'- -CCUCG--UGCCaGGcUGCGGCG-----CGGAGu -5'
31214 5' -61.3 NC_006560.1 + 118867 0.66 0.723105
Target:  5'- -cGGCGCGcGUgCaGACGgCGUGCCUCc -3'
miRNA:   3'- ccUCGUGC-CAgG-CUGCgGCGCGGAGu -5'
31214 5' -61.3 NC_006560.1 + 13673 0.66 0.722158
Target:  5'- cGAGCGCgaccgccaacaccGGcaacgCCGcCGCCGCGCCg-- -3'
miRNA:   3'- cCUCGUG-------------CCa----GGCuGCGGCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 146848 0.66 0.7136
Target:  5'- cGGcGGCGCGGggCGGgGCgGCGCC-CGg -3'
miRNA:   3'- -CC-UCGUGCCagGCUgCGgCGCGGaGU- -5'
31214 5' -61.3 NC_006560.1 + 127193 0.66 0.7136
Target:  5'- cGGuAGCGCG--CCGuCGUCGCGCC-CAc -3'
miRNA:   3'- -CC-UCGUGCcaGGCuGCGGCGCGGaGU- -5'
31214 5' -61.3 NC_006560.1 + 100496 0.66 0.7136
Target:  5'- gGGGGcCGCGGcgcucgaagaUCgCGGCGCUGgcggcCGCCUCGa -3'
miRNA:   3'- -CCUC-GUGCC----------AG-GCUGCGGC-----GCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 4300 0.66 0.7136
Target:  5'- -aGGCGCGGUCCagcuccACGUCGCcgGCCgUCAc -3'
miRNA:   3'- ccUCGUGCCAGGc-----UGCGGCG--CGG-AGU- -5'
31214 5' -61.3 NC_006560.1 + 81437 0.66 0.7136
Target:  5'- cGGGGCGgcccCGGUCgCGGCGUCGgGCg--- -3'
miRNA:   3'- -CCUCGU----GCCAG-GCUGCGGCgCGgagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.