miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31215 3' -64.7 NC_006560.1 + 34669 0.65 0.537159
Target:  5'- --gGC-GGGUCgcGGGGAggaaccuaccuguCCCGCCGGg -3'
miRNA:   3'- guaCGaCCCGGa-CCCCU-------------GGGCGGCCg -5'
31215 3' -64.7 NC_006560.1 + 112511 0.66 0.532465
Target:  5'- --cGCgGGGCCUGGagcucagcguggggcGGcACgUGCUGGCg -3'
miRNA:   3'- guaCGaCCCGGACC---------------CC-UGgGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 25849 0.66 0.529656
Target:  5'- --gGCcGGGCgCgcgcccGGGGcccgaugcacgcgcuCCCGCCGGCg -3'
miRNA:   3'- guaCGaCCCG-Ga-----CCCCu--------------GGGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 52227 0.66 0.528721
Target:  5'- --gGCUGGcgagcuGCCUGGc--CCCgGCCGGCg -3'
miRNA:   3'- guaCGACC------CGGACCccuGGG-CGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 21235 0.66 0.528721
Target:  5'- -uUGCUaGGCaaccGGGGACgCCGCgcaGGCg -3'
miRNA:   3'- guACGAcCCGga--CCCCUG-GGCGg--CCG- -5'
31215 3' -64.7 NC_006560.1 + 59337 0.66 0.528721
Target:  5'- cCcgGCcGGGUUccGGGGCCCGgUCGGCc -3'
miRNA:   3'- -GuaCGaCCCGGacCCCUGGGC-GGCCG- -5'
31215 3' -64.7 NC_006560.1 + 33846 0.66 0.528721
Target:  5'- --cGC-GGGCgUGGGGGCgCGCgCGcGUg -3'
miRNA:   3'- guaCGaCCCGgACCCCUGgGCG-GC-CG- -5'
31215 3' -64.7 NC_006560.1 + 106583 0.66 0.528721
Target:  5'- --gGCcgGGGCCUGGccGCCCcggucguCCGGCg -3'
miRNA:   3'- guaCGa-CCCGGACCccUGGGc------GGCCG- -5'
31215 3' -64.7 NC_006560.1 + 147915 0.66 0.528721
Target:  5'- --gGCggGGGCgggggagaGGGGGCCCG-CGGCc -3'
miRNA:   3'- guaCGa-CCCGga------CCCCUGGGCgGCCG- -5'
31215 3' -64.7 NC_006560.1 + 89211 0.66 0.528721
Target:  5'- -uUGCUaGGCaaccGGGGACgCCGCgcaGGCg -3'
miRNA:   3'- guACGAcCCGga--CCCCUG-GGCGg--CCG- -5'
31215 3' -64.7 NC_006560.1 + 513 0.66 0.528721
Target:  5'- --cGCcacgGGcGCCgGGGGGCggCgGCCGGCc -3'
miRNA:   3'- guaCGa---CC-CGGaCCCCUG--GgCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 72653 0.66 0.523123
Target:  5'- --cGCgaGGGCCgGGGGgcggcgaccagccccGCCCgucgaccccgacGCCGGCc -3'
miRNA:   3'- guaCGa-CCCGGaCCCC---------------UGGG------------CGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 11928 0.66 0.519404
Target:  5'- --cGC-GGGCCcgcagGaGGGGCCgGCgGGCc -3'
miRNA:   3'- guaCGaCCCGGa----C-CCCUGGgCGgCCG- -5'
31215 3' -64.7 NC_006560.1 + 94966 0.66 0.519404
Target:  5'- gCGUGCUGGcGCgCaucGGGGGCggGCgCGGCg -3'
miRNA:   3'- -GUACGACC-CG-Ga--CCCCUGggCG-GCCG- -5'
31215 3' -64.7 NC_006560.1 + 2180 0.66 0.519404
Target:  5'- --gGCaGGGCCUcGGG-CCCGgCGcGCg -3'
miRNA:   3'- guaCGaCCCGGAcCCCuGGGCgGC-CG- -5'
31215 3' -64.7 NC_006560.1 + 42545 0.66 0.519404
Target:  5'- --aGCgccccgGGGUCgcgcGGGGaggcGCCCGCCgcGGCg -3'
miRNA:   3'- guaCGa-----CCCGGa---CCCC----UGGGCGG--CCG- -5'
31215 3' -64.7 NC_006560.1 + 65915 0.66 0.519404
Target:  5'- aCGUGC-GGGCCgUGGGccgccCCCGCaggucCGGCc -3'
miRNA:   3'- -GUACGaCCCGG-ACCCcu---GGGCG-----GCCG- -5'
31215 3' -64.7 NC_006560.1 + 85494 0.66 0.518476
Target:  5'- --cGCuUGGGCUcGGGGucgccgggcugcuGCCCGCgGGg -3'
miRNA:   3'- guaCG-ACCCGGaCCCC-------------UGGGCGgCCg -5'
31215 3' -64.7 NC_006560.1 + 5161 0.66 0.510153
Target:  5'- --gGCcgGGGCCgcGGGGGCgggCCG-CGGCg -3'
miRNA:   3'- guaCGa-CCCGGa-CCCCUG---GGCgGCCG- -5'
31215 3' -64.7 NC_006560.1 + 98191 0.66 0.510153
Target:  5'- -----aGGGCCUcGGGGACgugggCCGCgCGGUc -3'
miRNA:   3'- guacgaCCCGGA-CCCCUG-----GGCG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.